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Mutant Information

Mutant Name	FN3926-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3926-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20624720 C-A Hetero INTERGENIC
SBS Chr1 22156422 A-G Hetero INTERGENIC
SBS Chr1 40754972 C-T Hetero INTERGENIC
SBS Chr2 2121679 C-T Hetero INTERGENIC
SBS Chr2 18053741 C-T Homo INTERGENIC
SBS Chr3 20179677 C-T Homo INTERGENIC
SBS Chr4 2518768 G-A Hetero INTERGENIC
SBS Chr4 9591490 C-T Homo INTERGENIC
SBS Chr4 26373630 C-T Hetero INTERGENIC
SBS Chr5 3688839 G-A Homo INTERGENIC
SBS Chr5 15910013 T-C Hetero INTRON
SBS Chr5 16269369 C-T Hetero INTERGENIC
SBS Chr5 27862654 C-T Homo INTERGENIC
SBS Chr6 2502471 A-T Hetero INTERGENIC
SBS Chr6 18880472 G-T Homo INTERGENIC
SBS Chr7 1234181 C-T Hetero INTERGENIC
SBS Chr7 25329870 G-A Hetero INTERGENIC
SBS Chr7 27237237 C-T Hetero INTERGENIC
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr11 10313362 A-C Hetero INTERGENIC
SBS Chr11 10890204 A-T Hetero INTERGENIC
SBS Chr11 10988746 G-A Hetero INTERGENIC
SBS Chr11 14000687 C-A Hetero INTERGENIC
SBS Chr11 15959342 G-A Hetero INTERGENIC
SBS Chr11 15959343 G-A Hetero INTERGENIC
SBS Chr11 21234138 A-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 505313 505318 5
Deletion Chr9 9263034 9263035 1
Deletion Chr10 10152529 10152555 26
Deletion Chr11 10398504 10398506 2
Deletion Chr2 11589906 11589912 6
Deletion Chr1 11683528 11683529 1
Deletion Chr8 14824965 14824970 5
Deletion Chr6 14907679 14907683 4
Deletion Chr4 15633403 15633421 18
Deletion Chr9 15940506 15940507 1
Deletion Chr1 17249110 17249265 155
Deletion Chr9 18295549 18295550 1
Deletion Chr9 18597466 18597474 8
Deletion Chr1 19717480 19717492 12
Deletion Chr6 19778024 19778033 9
Deletion Chr10 21897240 21897241 1
Deletion Chr3 22670748 22670758 10
Deletion Chr5 25057921 25057925 4
Deletion Chr4 28281802 28281805 3
Deletion Chr2 35184834 35184836 2
Deletion Chr1 36486001 36558000 71999 7
Deletion Chr1 39231087 39231093 6

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 30822267 30822275 7
Insertion Chr7 25839707 25839710 2
Insertion Chr11 13457944 13457949 4
Insertion Chr11 15281409 15281412 2
Insertion Chr12 10328415 10328418 2
Insertion Chr12 18660027 18660030 2 OsKitaake12g137400
Insertion Chr6 2211286 2211291 4
Insertion Chr11 14261831 14261834 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 29734109 30396017 2
Inversion Chr3 29734118 30396026 2
Inversion Chr1 36488537 36607110 OsKitaake01g388900
Inversion Chr1 36561380 36607114 OsKitaake01g388900
Inversion Chr1 41216755 41339277 OsKitaake01g450100
Inversion Chr1 41216761 41339279 OsKitaake01g450100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 16785985 Chr3 29291867 OsKitaake05g128600
Translocation Chr5 16786310 Chr3 29291859 OsKitaake05g128600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20624720	C-A	Hetero	INTERGENIC
SBS	Chr1	22156422	A-G	Hetero	INTERGENIC
SBS	Chr1	40754972	C-T	Hetero	INTERGENIC
SBS	Chr2	2121679	C-T	Hetero	INTERGENIC
SBS	Chr2	18053741	C-T	Homo	INTERGENIC
SBS	Chr3	20179677	C-T	Homo	INTERGENIC
SBS	Chr4	2518768	G-A	Hetero	INTERGENIC
SBS	Chr4	9591490	C-T	Homo	INTERGENIC
SBS	Chr4	26373630	C-T	Hetero	INTERGENIC
SBS	Chr5	3688839	G-A	Homo	INTERGENIC
SBS	Chr5	15910013	T-C	Hetero	INTRON
SBS	Chr5	16269369	C-T	Hetero	INTERGENIC
SBS	Chr5	27862654	C-T	Homo	INTERGENIC
SBS	Chr6	2502471	A-T	Hetero	INTERGENIC
SBS	Chr6	18880472	G-T	Homo	INTERGENIC
SBS	Chr7	1234181	C-T	Hetero	INTERGENIC
SBS	Chr7	25329870	G-A	Hetero	INTERGENIC
SBS	Chr7	27237237	C-T	Hetero	INTERGENIC
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr11	10313362	A-C	Hetero	INTERGENIC
SBS	Chr11	10890204	A-T	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Hetero	INTERGENIC
SBS	Chr11	14000687	C-A	Hetero	INTERGENIC
SBS	Chr11	15959342	G-A	Hetero	INTERGENIC
SBS	Chr11	15959343	G-A	Hetero	INTERGENIC
SBS	Chr11	21234138	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	505313	505318	5
Deletion	Chr9	9263034	9263035	1
Deletion	Chr10	10152529	10152555	26
Deletion	Chr11	10398504	10398506	2
Deletion	Chr2	11589906	11589912	6
Deletion	Chr1	11683528	11683529	1
Deletion	Chr8	14824965	14824970	5
Deletion	Chr6	14907679	14907683	4
Deletion	Chr4	15633403	15633421	18
Deletion	Chr9	15940506	15940507	1
Deletion	Chr1	17249110	17249265	155
Deletion	Chr9	18295549	18295550	1
Deletion	Chr9	18597466	18597474	8
Deletion	Chr1	19717480	19717492	12
Deletion	Chr6	19778024	19778033	9
Deletion	Chr10	21897240	21897241	1
Deletion	Chr3	22670748	22670758	10
Deletion	Chr5	25057921	25057925	4
Deletion	Chr4	28281802	28281805	3
Deletion	Chr2	35184834	35184836	2
Deletion	Chr1	36486001	36558000	71999	7
Deletion	Chr1	39231087	39231093	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	29734109	30396017	2
Inversion	Chr3	29734118	30396026	2
Inversion	Chr1	36488537	36607110	OsKitaake01g388900
Inversion	Chr1	36561380	36607114	OsKitaake01g388900
Inversion	Chr1	41216755	41339277	OsKitaake01g450100
Inversion	Chr1	41216761	41339279	OsKitaake01g450100

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes