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Mutant Information

Mutant Name	FN3927-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3927-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22706620 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g217100
SBS Chr1 39699264 T-A Hetero INTRON
SBS Chr2 28158413 C-A Hetero UTR_3_PRIME
SBS Chr2 28158471 A-T Hetero UTR_3_PRIME
SBS Chr2 30037127 A-G Hetero INTERGENIC
SBS Chr2 30244522 G-A Hetero INTERGENIC
SBS Chr3 31534427 T-C Hetero INTERGENIC
SBS Chr3 32444027 C-T Hetero UTR_3_PRIME
SBS Chr4 4716756 C-G Hetero INTERGENIC
SBS Chr4 11193259 T-G Hetero INTERGENIC
SBS Chr4 28807522 T-A Hetero INTERGENIC
SBS Chr4 29566005 C-A Hetero INTERGENIC
SBS Chr5 12662016 T-G Homo INTERGENIC
SBS Chr5 12750031 C-T Homo INTERGENIC
SBS Chr5 20085431 C-T Hetero INTERGENIC
SBS Chr6 5636461 T-A Homo INTERGENIC
SBS Chr6 25765733 T-A Homo INTERGENIC
SBS Chr6 26338728 C-A Homo INTRON
SBS Chr8 5037829 T-G Hetero INTERGENIC
SBS Chr8 17285613 G-A Hetero INTERGENIC
SBS Chr9 1155647 G-A Hetero INTERGENIC
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr10 7954128 A-T Hetero INTERGENIC
SBS Chr11 17117178 A-G Hetero INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 375668 375685 17
Deletion Chr8 432833 432837 4
Deletion Chr5 2186097 2186108 11
Deletion Chr9 3590843 3590854 11
Deletion Chr7 3925122 3925124 2
Deletion Chr11 5436175 5436179 4
Deletion Chr9 7887588 7887591 3
Deletion Chr9 10805355 10805385 30
Deletion Chr4 11391772 11391774 2
Deletion Chr7 15391596 15391598 2
Deletion Chr2 15843296 15843308 12
Deletion Chr2 16332001 16575000 242999 15
Deletion Chr6 18616086 18616093 7
Deletion Chr6 18619769 18619773 4
Deletion Chr3 20068682 20068683 1
Deletion Chr5 21861988 21861995 7
Deletion Chr7 26544784 26544788 4
Deletion Chr2 33138569 33138579 10
Deletion Chr1 43003734 43003760 26 OsKitaake01g474500

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 10273524 10273527 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 25984460 26326024 OsKitaake06g236003
Inversion Chr6 25984467 26326029 OsKitaake06g236003

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22706620	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g217100
SBS	Chr1	39699264	T-A	Hetero	INTRON
SBS	Chr2	28158413	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	28158471	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	30037127	A-G	Hetero	INTERGENIC
SBS	Chr2	30244522	G-A	Hetero	INTERGENIC
SBS	Chr3	31534427	T-C	Hetero	INTERGENIC
SBS	Chr3	32444027	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	4716756	C-G	Hetero	INTERGENIC
SBS	Chr4	11193259	T-G	Hetero	INTERGENIC
SBS	Chr4	28807522	T-A	Hetero	INTERGENIC
SBS	Chr4	29566005	C-A	Hetero	INTERGENIC
SBS	Chr5	12662016	T-G	Homo	INTERGENIC
SBS	Chr5	12750031	C-T	Homo	INTERGENIC
SBS	Chr5	20085431	C-T	Hetero	INTERGENIC
SBS	Chr6	5636461	T-A	Homo	INTERGENIC
SBS	Chr6	25765733	T-A	Homo	INTERGENIC
SBS	Chr6	26338728	C-A	Homo	INTRON
SBS	Chr8	5037829	T-G	Hetero	INTERGENIC
SBS	Chr8	17285613	G-A	Hetero	INTERGENIC
SBS	Chr9	1155647	G-A	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr10	7954128	A-T	Hetero	INTERGENIC
SBS	Chr11	17117178	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	375668	375685	17
Deletion	Chr8	432833	432837	4
Deletion	Chr5	2186097	2186108	11
Deletion	Chr9	3590843	3590854	11
Deletion	Chr7	3925122	3925124	2
Deletion	Chr11	5436175	5436179	4
Deletion	Chr9	7887588	7887591	3
Deletion	Chr9	10805355	10805385	30
Deletion	Chr4	11391772	11391774	2
Deletion	Chr7	15391596	15391598	2
Deletion	Chr2	15843296	15843308	12
Deletion	Chr2	16332001	16575000	242999	15
Deletion	Chr6	18616086	18616093	7
Deletion	Chr6	18619769	18619773	4
Deletion	Chr3	20068682	20068683	1
Deletion	Chr5	21861988	21861995	7
Deletion	Chr7	26544784	26544788	4
Deletion	Chr2	33138569	33138579	10
Deletion	Chr1	43003734	43003760	26	OsKitaake01g474500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	25984460	26326024	OsKitaake06g236003
Inversion	Chr6	25984467	26326029	OsKitaake06g236003

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes