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| Mutant Information |
|---|
| Mutant Name | FN3928-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3928-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26626084 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 36097910 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g383000 |
| SBS | Chr1 | 42685360 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 9826908 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24588641 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g244500 |
| SBS | Chr2 | 27442893 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8552987 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27089267 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 11282184 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26438383 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g234400 |
| SBS | Chr6 | 10809874 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21254322 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 17728405 | G-A | Homo | START_GAINED | |
| SBS | Chr7 | 17767719 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 17767720 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20894731 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27086748 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 993281 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8893453 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18108536 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 13031374 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2703057 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15617651 | T-G | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 4047760 | 4047761 | 1 | |
| Deletion | Chr4 | 4954128 | 4954141 | 13 | |
| Deletion | Chr2 | 7480780 | 7480782 | 2 | |
| Deletion | Chr5 | 9842025 | 9842026 | 1 | |
| Deletion | Chr9 | 11178621 | 11178637 | 16 | |
| Deletion | Chr5 | 13341950 | 13341954 | 4 | |
| Deletion | Chr2 | 16161629 | 16161635 | 6 | |
| Deletion | Chr11 | 17462127 | 17462133 | 6 | |
| Deletion | Chr11 | 17575882 | 17575884 | 2 | |
| Deletion | Chr7 | 17767484 | 17767488 | 4 | |
| Deletion | Chr11 | 17836883 | 17836897 | 14 | |
| Deletion | Chr5 | 18966279 | 18966283 | 4 | |
| Deletion | Chr8 | 26444269 | 26444290 | 21 | OsKitaake08g211900 |
| Deletion | Chr1 | 28771992 | 28772002 | 10 | |
| Deletion | Chr11 | 29025822 | 29025831 | 9 | |
| Deletion | Chr1 | 29425211 | 29425217 | 6 | |
| Deletion | Chr3 | 30568498 | 30568509 | 11 | |
| Deletion | Chr1 | 41494231 | 41494247 | 16 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 35778867 | 35778875 | 7 | |
| Insertion | Chr2 | 10699739 | 10699742 | 2 | |
| Insertion | Chr7 | 7050583 | 7050586 | 2 | |
| Insertion | Chr11 | 3594207 | 3594210 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6394731 | Chr5 | 8150849 | OsKitaake07g074500 |
| Translocation | Chr7 | 6399413 | Chr5 | 8150847 | OsKitaake07g074500 |
| Translocation | Chr8 | 7239993 | Chr6 | 13177931 |