Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3930-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3930-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1665027 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21735282 | A-T | Homo | INTRON | |
| SBS | Chr2 | 1580534 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3892434 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 33155664 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 21184527 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23653910 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17446962 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g086500 |
| SBS | Chr4 | 22954672 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 26071837 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 28700555 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 2308968 | A-G | Homo | SPLICE_SITE_DONOR | OsKitaake05g025800 |
| SBS | Chr5 | 4731614 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 24068568 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27935340 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g253400 |
| SBS | Chr6 | 28103806 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 1800604 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 13161128 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2657323 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 22990679 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26908361 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3741457 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 12931912 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 14402589 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6774526 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 1155558 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 10608914 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8922732 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 11831576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22426573 | A-G | Hetero | INTRON |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 712968 | 712970 | 2 | |
| Deletion | Chr3 | 1140641 | 1140649 | 8 | |
| Deletion | Chr5 | 3635001 | 3645000 | 9999 | OsKitaake05g044200 |
| Deletion | Chr9 | 9358001 | 9728000 | 369999 | 22 |
| Deletion | Chr12 | 12722143 | 12722145 | 2 | |
| Deletion | Chr8 | 17148001 | 17274000 | 125999 | 6 |
| Deletion | Chr12 | 17768124 | 17768128 | 4 | |
| Deletion | Chr2 | 19003022 | 19003023 | 1 | |
| Deletion | Chr12 | 19091487 | 19091489 | 2 | |
| Deletion | Chr11 | 19622390 | 19622399 | 9 | |
| Deletion | Chr11 | 20727538 | 20727545 | 7 | OsKitaake11g163200 |
| Deletion | Chr12 | 24754897 | 24754902 | 5 | |
| Deletion | Chr5 | 27700270 | 27700279 | 9 | |
| Deletion | Chr6 | 28103793 | 28103794 | 1 | |
| Deletion | Chr4 | 28163957 | 28163961 | 4 | |
| Deletion | Chr11 | 28234603 | 28234611 | 8 | |
| Deletion | Chr8 | 29020001 | 29176000 | 155999 | 19 |
| Deletion | Chr1 | 38316938 | 38316939 | 1 | OsKitaake01g408400 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 16897626 | 17240866 | |
| Inversion | Chr5 | 17240860 | 17356765 | |
| Inversion | Chr1 | 25806364 | 26058568 | |
| Inversion | Chr1 | 25811711 | 26058573 | OsKitaake01g251200 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 23485338 | Chr3 | 11998857 | OsKitaake03g163101 |
| Translocation | Chr8 | 29025273 | Chr3 | 11998857 | OsKitaake03g163101 |
| Translocation | Chr8 | 29025593 | Chr3 | 11934436 | OsKitaake03g162300 |
| Translocation | Chr8 | 29026702 | Chr5 | 17593201 | 2 |