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Mutant Information

Mutant Name	FN3932-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3932-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4779020 G-A Hetero INTERGENIC
SBS Chr2 33045891 C-T Homo INTERGENIC
SBS Chr3 20807016 G-C Hetero INTERGENIC
SBS Chr4 3711569 C-G Hetero INTERGENIC
SBS Chr4 7624576 G-T Hetero INTERGENIC
SBS Chr4 12744399 G-T Hetero INTRON
SBS Chr4 15824407 G-A Hetero START_GAINED
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 16325767 G-A Hetero INTERGENIC
SBS Chr4 17465106 G-A Hetero INTRON
SBS Chr4 20399887 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g109500
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr6 4554084 C-T Homo INTERGENIC
SBS Chr6 13165629 G-A Homo INTERGENIC
SBS Chr6 17396405 C-T Hetero INTERGENIC
SBS Chr7 6483789 T-A Hetero INTERGENIC
SBS Chr7 29409053 A-T Homo INTERGENIC
SBS Chr8 15149547 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g118500
SBS Chr8 19636968 G-A Hetero INTERGENIC
SBS Chr8 20764569 C-G Hetero INTERGENIC
SBS Chr9 19597954 T-A Homo INTERGENIC
SBS Chr11 9824781 G-C Hetero INTERGENIC
SBS Chr11 15343091 C-A Hetero INTERGENIC
SBS Chr12 26635582 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g221400

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2045394 2045402 8
Deletion Chr3 3674878 3674880 2
Deletion Chr9 4721094 4721096 2
Deletion Chr5 9332552 9332557 5
Deletion Chr3 10563851 10563853 2
Deletion Chr6 12531139 12531146 7
Deletion Chr12 14356607 14356608 1
Deletion Chr7 14950001 15071000 120999 5
Deletion Chr5 19905754 19905758 4
Deletion Chr5 23783001 23809000 25999 3
Deletion Chr8 26099885 26099892 7
Deletion Chr12 26135873 26135877 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42832846 42832848 1
Insertion Chr6 167322 167325 2
Insertion Chr6 19139287 19139290 2
Insertion Chr6 29136797 29136800 2 OsKitaake06g268803

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 12937390 12943157

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 34153824 Chr1 12943149 OsKitaake03g369200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4779020	G-A	Hetero	INTERGENIC
SBS	Chr2	33045891	C-T	Homo	INTERGENIC
SBS	Chr3	20807016	G-C	Hetero	INTERGENIC
SBS	Chr4	3711569	C-G	Hetero	INTERGENIC
SBS	Chr4	7624576	G-T	Hetero	INTERGENIC
SBS	Chr4	12744399	G-T	Hetero	INTRON
SBS	Chr4	15824407	G-A	Hetero	START_GAINED
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	16325767	G-A	Hetero	INTERGENIC
SBS	Chr4	17465106	G-A	Hetero	INTRON
SBS	Chr4	20399887	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g109500
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr6	4554084	C-T	Homo	INTERGENIC
SBS	Chr6	13165629	G-A	Homo	INTERGENIC
SBS	Chr6	17396405	C-T	Hetero	INTERGENIC
SBS	Chr7	6483789	T-A	Hetero	INTERGENIC
SBS	Chr7	29409053	A-T	Homo	INTERGENIC
SBS	Chr8	15149547	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g118500
SBS	Chr8	19636968	G-A	Hetero	INTERGENIC
SBS	Chr8	20764569	C-G	Hetero	INTERGENIC
SBS	Chr9	19597954	T-A	Homo	INTERGENIC
SBS	Chr11	9824781	G-C	Hetero	INTERGENIC
SBS	Chr11	15343091	C-A	Hetero	INTERGENIC
SBS	Chr12	26635582	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g221400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2045394	2045402	8
Deletion	Chr3	3674878	3674880	2
Deletion	Chr9	4721094	4721096	2
Deletion	Chr5	9332552	9332557	5
Deletion	Chr3	10563851	10563853	2
Deletion	Chr6	12531139	12531146	7
Deletion	Chr12	14356607	14356608	1
Deletion	Chr7	14950001	15071000	120999	5
Deletion	Chr5	19905754	19905758	4
Deletion	Chr5	23783001	23809000	25999	3
Deletion	Chr8	26099885	26099892	7
Deletion	Chr12	26135873	26135877	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	12937390	12943157

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes