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| Mutant Information |
|---|
| Mutant Name | FN3933-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3933-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27591795 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34258414 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 39975622 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 43434815 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 5357868 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 10386995 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 19579452 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25156029 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 35693058 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18679760 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 1147952 | G-T | Hetero | INTRON | |
| SBS | Chr5 | 15554962 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 24161447 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 12649607 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18912491 | G-A | Homo | INTRON | |
| SBS | Chr6 | 21900464 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 30998866 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 28733100 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 1662099 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 9297411 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13484492 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 14285112 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18872400 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4464853 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 7590327 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2126916 | G-T | Homo | INTRON | |
| SBS | Chr12 | 5441895 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10085955 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 10312976 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 14623826 | C-G | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1891001 | 1906000 | 14999 | 2 |
| Deletion | Chr3 | 3070333 | 3070335 | 2 | |
| Deletion | Chr4 | 4020515 | 4020519 | 4 | |
| Deletion | Chr12 | 6752050 | 6752056 | 6 | |
| Deletion | Chr11 | 6767215 | 6767219 | 4 | |
| Deletion | Chr7 | 7144508 | 7144517 | 9 | |
| Deletion | Chr1 | 8882533 | 8882538 | 5 | OsKitaake01g110800 |
| Deletion | Chr7 | 10588587 | 10588588 | 1 | |
| Deletion | Chr8 | 12398999 | 12399000 | 1 | |
| Deletion | Chr11 | 13452014 | 13452023 | 9 | |
| Deletion | Chr3 | 13880074 | 13880075 | 1 | |
| Deletion | Chr8 | 15521301 | 15521306 | 5 | |
| Deletion | Chr4 | 18607403 | 18607406 | 3 | |
| Deletion | Chr12 | 22338001 | 22382000 | 43999 | |
| Deletion | Chr5 | 24492505 | 24492506 | 1 | |
| Deletion | Chr6 | 25662399 | 25662400 | 1 | |
| Deletion | Chr2 | 36177001 | 36211000 | 33999 | 4 |
| Deletion | Chr3 | 36264437 | 36264438 | 1 | |
| Deletion | Chr1 | 37651050 | 37651051 | 1 |
Insertions: 5
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 12627854 | 13159018 |