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Mutant Information

Mutant Name	FN3934-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3934-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16316247 G-T Homo INTERGENIC
SBS Chr1 20675625 C-T Homo UTR_3_PRIME
SBS Chr1 37283717 T-A Homo INTERGENIC
SBS Chr2 24847398 C-T Hetero INTERGENIC
SBS Chr3 9818600 T-A Homo INTERGENIC
SBS Chr3 15637660 T-A Homo INTERGENIC
SBS Chr3 17478530 C-T Hetero INTERGENIC
SBS Chr3 22657507 T-A Homo INTERGENIC
SBS Chr3 33269744 C-T Homo INTRON
SBS Chr3 33952953 T-G Homo NON_SYNONYMOUS_CODING OsKitaake03g366500
SBS Chr4 409321 C-A Homo INTERGENIC
SBS Chr4 4415217 T-G Homo INTERGENIC
SBS Chr4 27747087 T-C Hetero INTRON
SBS Chr4 28150549 G-T Homo INTERGENIC
SBS Chr4 30313855 T-C Hetero INTERGENIC
SBS Chr4 33726741 C-T Homo INTERGENIC
SBS Chr6 18506066 T-C Hetero INTERGENIC
SBS Chr6 19671978 C-T Hetero INTERGENIC
SBS Chr6 20263293 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 12449107 G-T Hetero INTERGENIC
SBS Chr7 14860070 C-A Hetero INTERGENIC
SBS Chr7 20948093 C-T Homo INTERGENIC
SBS Chr7 20948096 G-A Homo INTERGENIC
SBS Chr8 6462744 C-T Homo INTERGENIC
SBS Chr8 12910850 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g108900
SBS Chr8 15833665 C-T Hetero INTERGENIC
SBS Chr9 13128763 G-T Hetero INTERGENIC
SBS Chr10 4986201 G-A Hetero INTERGENIC
SBS Chr10 11194689 C-T Hetero INTERGENIC
SBS Chr10 22336430 C-T Hetero INTERGENIC
SBS Chr11 13549626 A-G Homo INTERGENIC
SBS Chr11 15846750 C-T Homo INTRON
SBS Chr11 21048854 G-A Hetero INTRON
SBS Chr11 21048855 G-A Hetero INTRON
SBS Chr11 21048860 G-A Hetero INTRON
SBS Chr12 17491798 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g128800
SBS Chr12 21119663 A-G Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5709374 5709379 5
Deletion Chr5 10693671 10693692 21
Deletion Chr11 13307640 13307641 1
Deletion Chr12 14790529 14790538 9
Deletion Chr12 15374621 15374622 1
Deletion Chr8 16977235 16977242 7
Deletion Chr3 20379972 20379980 8
Deletion Chr5 22013460 22013462 2
Deletion Chr10 23505173 23505174 1
Deletion Chr4 24798058 24798059 1
Deletion Chr4 26010239 26010245 6
Deletion Chr6 31022511 31022512 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24005733 24005737 3
Insertion Chr2 16616671 16616674 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16316247	G-T	Homo	INTERGENIC
SBS	Chr1	20675625	C-T	Homo	UTR_3_PRIME
SBS	Chr1	37283717	T-A	Homo	INTERGENIC
SBS	Chr2	24847398	C-T	Hetero	INTERGENIC
SBS	Chr3	9818600	T-A	Homo	INTERGENIC
SBS	Chr3	15637660	T-A	Homo	INTERGENIC
SBS	Chr3	17478530	C-T	Hetero	INTERGENIC
SBS	Chr3	22657507	T-A	Homo	INTERGENIC
SBS	Chr3	33269744	C-T	Homo	INTRON
SBS	Chr3	33952953	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g366500
SBS	Chr4	409321	C-A	Homo	INTERGENIC
SBS	Chr4	4415217	T-G	Homo	INTERGENIC
SBS	Chr4	27747087	T-C	Hetero	INTRON
SBS	Chr4	28150549	G-T	Homo	INTERGENIC
SBS	Chr4	30313855	T-C	Hetero	INTERGENIC
SBS	Chr4	33726741	C-T	Homo	INTERGENIC
SBS	Chr6	18506066	T-C	Hetero	INTERGENIC
SBS	Chr6	19671978	C-T	Hetero	INTERGENIC
SBS	Chr6	20263293	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	12449107	G-T	Hetero	INTERGENIC
SBS	Chr7	14860070	C-A	Hetero	INTERGENIC
SBS	Chr7	20948093	C-T	Homo	INTERGENIC
SBS	Chr7	20948096	G-A	Homo	INTERGENIC
SBS	Chr8	6462744	C-T	Homo	INTERGENIC
SBS	Chr8	12910850	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g108900
SBS	Chr8	15833665	C-T	Hetero	INTERGENIC
SBS	Chr9	13128763	G-T	Hetero	INTERGENIC
SBS	Chr10	4986201	G-A	Hetero	INTERGENIC
SBS	Chr10	11194689	C-T	Hetero	INTERGENIC
SBS	Chr10	22336430	C-T	Hetero	INTERGENIC
SBS	Chr11	13549626	A-G	Homo	INTERGENIC
SBS	Chr11	15846750	C-T	Homo	INTRON
SBS	Chr11	21048854	G-A	Hetero	INTRON
SBS	Chr11	21048855	G-A	Hetero	INTRON
SBS	Chr11	21048860	G-A	Hetero	INTRON
SBS	Chr12	17491798	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g128800
SBS	Chr12	21119663	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5709374	5709379	5
Deletion	Chr5	10693671	10693692	21
Deletion	Chr11	13307640	13307641	1
Deletion	Chr12	14790529	14790538	9
Deletion	Chr12	15374621	15374622	1
Deletion	Chr8	16977235	16977242	7
Deletion	Chr3	20379972	20379980	8
Deletion	Chr5	22013460	22013462	2
Deletion	Chr10	23505173	23505174	1
Deletion	Chr4	24798058	24798059	1
Deletion	Chr4	26010239	26010245	6
Deletion	Chr6	31022511	31022512	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes