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Mutant Information

Mutant Name	FN3935-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3935-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 719373 A-G Hetero INTRON
SBS Chr2 17315269 G-A Hetero INTERGENIC
SBS Chr2 18872403 A-T Hetero INTERGENIC
SBS Chr2 23268629 C-T Homo INTERGENIC
SBS Chr2 23268630 C-T Homo INTERGENIC
SBS Chr2 23268636 C-T Homo INTERGENIC
SBS Chr2 23268637 C-T Homo INTERGENIC
SBS Chr2 27747844 A-G Homo UTR_5_PRIME
SBS Chr2 28659698 A-G Homo UTR_3_PRIME
SBS Chr3 16448143 C-T Homo INTERGENIC
SBS Chr3 17287302 T-A Hetero INTERGENIC
SBS Chr3 20358288 A-G Hetero INTERGENIC
SBS Chr3 24572747 C-G Hetero INTERGENIC
SBS Chr3 33614521 G-A Hetero INTERGENIC
SBS Chr4 3654026 T-C Hetero INTRON
SBS Chr4 15995281 G-A Hetero INTERGENIC
SBS Chr5 3244451 T-C Hetero UTR_3_PRIME
SBS Chr5 11816163 C-T Hetero INTERGENIC
SBS Chr5 15602367 G-A Hetero INTERGENIC
SBS Chr5 19196231 C-T Hetero INTERGENIC
SBS Chr6 9367840 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g111000
SBS Chr6 9367841 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g111000
SBS Chr6 16053906 G-A Hetero INTERGENIC
SBS Chr6 23019209 A-T Hetero INTERGENIC
SBS Chr8 811882 C-T Hetero INTERGENIC
SBS Chr8 5981638 C-T Homo INTERGENIC
SBS Chr8 6517976 G-T Hetero INTERGENIC
SBS Chr8 15677272 A-T Homo INTERGENIC
SBS Chr10 4184755 A-G Hetero INTERGENIC
SBS Chr10 22313946 C-T Hetero INTERGENIC
SBS Chr10 23940011 C-T Homo UTR_3_PRIME
SBS Chr11 9732636 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g100500
SBS Chr12 1610760 T-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 103454 104161 707
Deletion Chr8 1254892 1254906 14
Deletion Chr8 1359340 1359343 3
Deletion Chr6 1801247 1801249 2
Deletion Chr6 3182052 3182057 5
Deletion Chr2 6462606 6462607 1
Deletion Chr6 13673335 13673342 7
Deletion Chr5 20241042 20241043 1
Deletion Chr2 21898530 21898535 5
Deletion Chr5 22176982 22176993 11
Deletion Chr1 23705001 23724000 18999 OsKitaake01g227500
Deletion Chr12 23776822 23776842 20
Deletion Chr1 23870472 23870480 8
Deletion Chr3 30928318 30928319 1 OsKitaake03g324700
Deletion Chr1 31935905 31935912 7
Deletion Chr3 32429253 32429254 1
Deletion Chr2 33763246 33763252 6 OsKitaake02g349200

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3973386 3973389 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 3570503 3667979
Inversion Chr4 3570578 3667984
Inversion Chr12 8094306 8159109
Inversion Chr3 28811476 29266005 2
Inversion Chr3 28811483 29266015 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 13963074 Chr1 37062979 OsKitaake01g395000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	719373	A-G	Hetero	INTRON
SBS	Chr2	17315269	G-A	Hetero	INTERGENIC
SBS	Chr2	18872403	A-T	Hetero	INTERGENIC
SBS	Chr2	23268629	C-T	Homo	INTERGENIC
SBS	Chr2	23268630	C-T	Homo	INTERGENIC
SBS	Chr2	23268636	C-T	Homo	INTERGENIC
SBS	Chr2	23268637	C-T	Homo	INTERGENIC
SBS	Chr2	27747844	A-G	Homo	UTR_5_PRIME
SBS	Chr2	28659698	A-G	Homo	UTR_3_PRIME
SBS	Chr3	16448143	C-T	Homo	INTERGENIC
SBS	Chr3	17287302	T-A	Hetero	INTERGENIC
SBS	Chr3	20358288	A-G	Hetero	INTERGENIC
SBS	Chr3	24572747	C-G	Hetero	INTERGENIC
SBS	Chr3	33614521	G-A	Hetero	INTERGENIC
SBS	Chr4	3654026	T-C	Hetero	INTRON
SBS	Chr4	15995281	G-A	Hetero	INTERGENIC
SBS	Chr5	3244451	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	11816163	C-T	Hetero	INTERGENIC
SBS	Chr5	15602367	G-A	Hetero	INTERGENIC
SBS	Chr5	19196231	C-T	Hetero	INTERGENIC
SBS	Chr6	9367840	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g111000
SBS	Chr6	9367841	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g111000
SBS	Chr6	16053906	G-A	Hetero	INTERGENIC
SBS	Chr6	23019209	A-T	Hetero	INTERGENIC
SBS	Chr8	811882	C-T	Hetero	INTERGENIC
SBS	Chr8	5981638	C-T	Homo	INTERGENIC
SBS	Chr8	6517976	G-T	Hetero	INTERGENIC
SBS	Chr8	15677272	A-T	Homo	INTERGENIC
SBS	Chr10	4184755	A-G	Hetero	INTERGENIC
SBS	Chr10	22313946	C-T	Hetero	INTERGENIC
SBS	Chr10	23940011	C-T	Homo	UTR_3_PRIME
SBS	Chr11	9732636	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g100500
SBS	Chr12	1610760	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	103454	104161	707
Deletion	Chr8	1254892	1254906	14
Deletion	Chr8	1359340	1359343	3
Deletion	Chr6	1801247	1801249	2
Deletion	Chr6	3182052	3182057	5
Deletion	Chr2	6462606	6462607	1
Deletion	Chr6	13673335	13673342	7
Deletion	Chr5	20241042	20241043	1
Deletion	Chr2	21898530	21898535	5
Deletion	Chr5	22176982	22176993	11
Deletion	Chr1	23705001	23724000	18999	OsKitaake01g227500
Deletion	Chr12	23776822	23776842	20
Deletion	Chr1	23870472	23870480	8
Deletion	Chr3	30928318	30928319	1	OsKitaake03g324700
Deletion	Chr1	31935905	31935912	7
Deletion	Chr3	32429253	32429254	1
Deletion	Chr2	33763246	33763252	6	OsKitaake02g349200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3570503	3667979
Inversion	Chr4	3570578	3667984
Inversion	Chr12	8094306	8159109
Inversion	Chr3	28811476	29266005	2
Inversion	Chr3	28811483	29266015	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes