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| Mutant Information |
|---|
| Mutant Name | FN3937-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3937-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3657468 | T-G | Homo | INTRON | |
| SBS | Chr1 | 15535065 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 23711692 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 36716905 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 36716906 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 40757020 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20472282 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 36324956 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28133238 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2648781 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5059844 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6001184 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 8559663 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 27828651 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 19544848 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23778787 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 29446739 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g272800 |
| SBS | Chr7 | 25268768 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25851692 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7738229 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 18595207 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 7955732 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8522432 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1963501 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8280815 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7365096 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8512836 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10628998 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18835135 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 24332860 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1492613 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 10763456 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 27076350 | G-A | Hetero | INTRON |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2520971 | 2520972 | 1 | |
| Deletion | Chr4 | 2835049 | 2835053 | 4 | |
| Deletion | Chr7 | 11984659 | 11984660 | 1 | |
| Deletion | Chr12 | 22820007 | 22820008 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 29477293 | 29477301 | 7 | |
| Insertion | Chr7 | 8251469 | 8251472 | 2 | |
| Insertion | Chr5 | 30215229 | 30215231 | 1 | |
| Insertion | Chr8 | 12883947 | 12883950 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 28675004 | 28746797 | 2 |
| Inversion | Chr3 | 28675028 | 28746803 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 12490588 | Chr10 | 8114276 | |
| Translocation | Chr12 | 12491103 | Chr10 | 8114272 |