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Mutant Information

Mutant Name	FN3938-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3938-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9253384 C-T Homo INTERGENIC
SBS Chr1 19515409 G-A Hetero INTERGENIC
SBS Chr2 158389 A-G Hetero INTRON
SBS Chr2 14182086 A-C Homo INTERGENIC
SBS Chr2 31500983 G-A Hetero INTERGENIC
SBS Chr4 6237082 C-A Hetero INTERGENIC
SBS Chr4 7159721 A-G Homo INTERGENIC
SBS Chr4 23893881 T-A Hetero INTERGENIC
SBS Chr4 26632911 G-A Homo INTERGENIC
SBS Chr5 18904780 A-T Hetero INTERGENIC
SBS Chr5 29978688 T-A Hetero INTERGENIC
SBS Chr6 4610601 T-C Hetero INTERGENIC
SBS Chr6 22260240 C-A Homo INTRON
SBS Chr6 27251725 C-T Homo INTERGENIC
SBS Chr7 15920054 A-G Hetero INTERGENIC
SBS Chr7 17607063 A-T Hetero INTERGENIC
SBS Chr7 18112456 A-T Hetero INTERGENIC
SBS Chr7 22075040 A-T Hetero INTERGENIC
SBS Chr7 27822854 G-A Homo INTERGENIC
SBS Chr8 3488200 C-G Homo INTERGENIC
SBS Chr8 26315656 T-C Hetero INTERGENIC
SBS Chr8 26576928 A-T Hetero INTERGENIC
SBS Chr9 16401402 A-G Hetero INTERGENIC
SBS Chr10 17809089 G-A Hetero INTRON
SBS Chr10 21706020 C-A Hetero INTERGENIC
SBS Chr11 16972422 C-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2440965 2440966 1
Deletion Chr7 4433419 4433421 2
Deletion Chr9 12480429 12480432 3
Deletion Chr10 12631171 12631178 7
Deletion Chr5 14774208 14774209 1
Deletion Chr12 18545478 18545486 8
Deletion Chr11 19236075 19236089 14

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28439059 28439062 2
Insertion Chr5 2526803 2526806 2
Insertion Chr7 7057848 7057851 2
Insertion Chr9 12019103 12019105 1
Insertion Chr7 12020386 12020388 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2502154 2541969
Inversion Chr8 2872426 3481923
Inversion Chr11 4536691 5110803 OsKitaake11g060300
Inversion Chr9 5269973 5431727
Inversion Chr9 5270021 5469899

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 4536702 Chr2 10013989 OsKitaake11g060300
Translocation Chr11 5110814 Chr2 10006594

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9253384	C-T	Homo	INTERGENIC
SBS	Chr1	19515409	G-A	Hetero	INTERGENIC
SBS	Chr2	158389	A-G	Hetero	INTRON
SBS	Chr2	14182086	A-C	Homo	INTERGENIC
SBS	Chr2	31500983	G-A	Hetero	INTERGENIC
SBS	Chr4	6237082	C-A	Hetero	INTERGENIC
SBS	Chr4	7159721	A-G	Homo	INTERGENIC
SBS	Chr4	23893881	T-A	Hetero	INTERGENIC
SBS	Chr4	26632911	G-A	Homo	INTERGENIC
SBS	Chr5	18904780	A-T	Hetero	INTERGENIC
SBS	Chr5	29978688	T-A	Hetero	INTERGENIC
SBS	Chr6	4610601	T-C	Hetero	INTERGENIC
SBS	Chr6	22260240	C-A	Homo	INTRON
SBS	Chr6	27251725	C-T	Homo	INTERGENIC
SBS	Chr7	15920054	A-G	Hetero	INTERGENIC
SBS	Chr7	17607063	A-T	Hetero	INTERGENIC
SBS	Chr7	18112456	A-T	Hetero	INTERGENIC
SBS	Chr7	22075040	A-T	Hetero	INTERGENIC
SBS	Chr7	27822854	G-A	Homo	INTERGENIC
SBS	Chr8	3488200	C-G	Homo	INTERGENIC
SBS	Chr8	26315656	T-C	Hetero	INTERGENIC
SBS	Chr8	26576928	A-T	Hetero	INTERGENIC
SBS	Chr9	16401402	A-G	Hetero	INTERGENIC
SBS	Chr10	17809089	G-A	Hetero	INTRON
SBS	Chr10	21706020	C-A	Hetero	INTERGENIC
SBS	Chr11	16972422	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2440965	2440966	1
Deletion	Chr7	4433419	4433421	2
Deletion	Chr9	12480429	12480432	3
Deletion	Chr10	12631171	12631178	7
Deletion	Chr5	14774208	14774209	1
Deletion	Chr12	18545478	18545486	8
Deletion	Chr11	19236075	19236089	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2502154	2541969
Inversion	Chr8	2872426	3481923
Inversion	Chr11	4536691	5110803	OsKitaake11g060300
Inversion	Chr9	5269973	5431727
Inversion	Chr9	5270021	5469899

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes