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Mutant Information

Mutant Name	FN3940-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3940-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 85580 G-C Hetero INTERGENIC
SBS Chr1 8134689 C-T Homo INTERGENIC
SBS Chr1 8134690 A-T Homo INTERGENIC
SBS Chr2 4008689 G-A Hetero INTERGENIC
SBS Chr2 13194940 G-A Hetero INTERGENIC
SBS Chr2 18401925 G-A Hetero INTERGENIC
SBS Chr2 30525080 G-C Hetero INTERGENIC
SBS Chr2 31315097 A-T Hetero INTERGENIC
SBS Chr3 6394113 A-G Homo INTRON
SBS Chr3 18017952 G-A Hetero INTERGENIC
SBS Chr3 19127743 G-T Hetero INTERGENIC
SBS Chr3 20350056 T-A Hetero UTR_5_PRIME
SBS Chr3 20350057 C-A Hetero UTR_5_PRIME
SBS Chr3 27137132 T-G Homo INTERGENIC
SBS Chr3 30487743 A-G Homo INTERGENIC
SBS Chr3 32682854 T-A Homo INTRON
SBS Chr4 15754060 G-A Homo INTERGENIC
SBS Chr5 2033768 G-A Homo INTERGENIC
SBS Chr5 2500806 G-A Homo INTERGENIC
SBS Chr5 15607576 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g119600
SBS Chr5 16240657 C-T Hetero INTERGENIC
SBS Chr6 1849781 T-A Hetero INTERGENIC
SBS Chr6 27296464 G-A Homo INTERGENIC
SBS Chr6 27482552 T-G Homo INTERGENIC
SBS Chr7 4052434 A-G Homo INTRON
SBS Chr7 16221685 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g134300
SBS Chr7 22340839 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g189100
SBS Chr8 449747 T-C Hetero INTRON
SBS Chr8 23229041 T-C Homo INTRON
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr11 14824699 C-G Homo INTERGENIC
SBS Chr11 15446001 G-T Homo INTERGENIC
SBS Chr11 19414012 A-G Homo INTERGENIC
SBS Chr12 7754287 C-A Hetero INTERGENIC
SBS Chr12 11196281 C-T Hetero INTERGENIC
SBS Chr12 12879609 A-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1393820 1393841 21
Deletion Chr10 1992186 1992195 9
Deletion Chr5 2502280 2502292 12 OsKitaake05g028500
Deletion Chr5 2997923 2997924 1
Deletion Chr3 7769793 7769799 6 OsKitaake03g107600
Deletion Chr9 11764700 11764701 1
Deletion Chr1 13768472 13768479 7
Deletion Chr8 18381618 18381623 5
Deletion Chr10 19062554 19062556 2
Deletion Chr12 19077333 19077340 7
Deletion Chr5 20070650 20070652 2
Deletion Chr9 20573326 20573328 2
Deletion Chr3 21463949 21463950 1
Deletion Chr7 22685471 22685486 15
Deletion Chr3 23426889 23426898 9
Deletion Chr5 28006354 28006375 21

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 14494661 14494664 2
Insertion Chr8 620083 620086 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1070566 1586468
Inversion Chr4 1070587 1586489

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3878319 Chr3 26927298
Translocation Chr12 3878329 Chr3 26924569
Translocation Chr12 26834354 Chr4 20313746 2
Translocation Chr12 26845156 Chr4 20313747 OsKitaake04g108300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	85580	G-C	Hetero	INTERGENIC
SBS	Chr1	8134689	C-T	Homo	INTERGENIC
SBS	Chr1	8134690	A-T	Homo	INTERGENIC
SBS	Chr2	4008689	G-A	Hetero	INTERGENIC
SBS	Chr2	13194940	G-A	Hetero	INTERGENIC
SBS	Chr2	18401925	G-A	Hetero	INTERGENIC
SBS	Chr2	30525080	G-C	Hetero	INTERGENIC
SBS	Chr2	31315097	A-T	Hetero	INTERGENIC
SBS	Chr3	6394113	A-G	Homo	INTRON
SBS	Chr3	18017952	G-A	Hetero	INTERGENIC
SBS	Chr3	19127743	G-T	Hetero	INTERGENIC
SBS	Chr3	20350056	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	20350057	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	27137132	T-G	Homo	INTERGENIC
SBS	Chr3	30487743	A-G	Homo	INTERGENIC
SBS	Chr3	32682854	T-A	Homo	INTRON
SBS	Chr4	15754060	G-A	Homo	INTERGENIC
SBS	Chr5	2033768	G-A	Homo	INTERGENIC
SBS	Chr5	2500806	G-A	Homo	INTERGENIC
SBS	Chr5	15607576	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g119600
SBS	Chr5	16240657	C-T	Hetero	INTERGENIC
SBS	Chr6	1849781	T-A	Hetero	INTERGENIC
SBS	Chr6	27296464	G-A	Homo	INTERGENIC
SBS	Chr6	27482552	T-G	Homo	INTERGENIC
SBS	Chr7	4052434	A-G	Homo	INTRON
SBS	Chr7	16221685	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g134300
SBS	Chr7	22340839	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g189100
SBS	Chr8	449747	T-C	Hetero	INTRON
SBS	Chr8	23229041	T-C	Homo	INTRON
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr11	14824699	C-G	Homo	INTERGENIC
SBS	Chr11	15446001	G-T	Homo	INTERGENIC
SBS	Chr11	19414012	A-G	Homo	INTERGENIC
SBS	Chr12	7754287	C-A	Hetero	INTERGENIC
SBS	Chr12	11196281	C-T	Hetero	INTERGENIC
SBS	Chr12	12879609	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1393820	1393841	21
Deletion	Chr10	1992186	1992195	9
Deletion	Chr5	2502280	2502292	12	OsKitaake05g028500
Deletion	Chr5	2997923	2997924	1
Deletion	Chr3	7769793	7769799	6	OsKitaake03g107600
Deletion	Chr9	11764700	11764701	1
Deletion	Chr1	13768472	13768479	7
Deletion	Chr8	18381618	18381623	5
Deletion	Chr10	19062554	19062556	2
Deletion	Chr12	19077333	19077340	7
Deletion	Chr5	20070650	20070652	2
Deletion	Chr9	20573326	20573328	2
Deletion	Chr3	21463949	21463950	1
Deletion	Chr7	22685471	22685486	15
Deletion	Chr3	23426889	23426898	9
Deletion	Chr5	28006354	28006375	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1070566	1586468
Inversion	Chr4	1070587	1586489

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes