Search Kitaake

Mutant Information

Mutant Name	FN3941-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3941-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12004447 T-A Hetero INTERGENIC
SBS Chr1 12009779 A-C Hetero INTERGENIC
SBS Chr1 15477100 C-A Hetero INTERGENIC
SBS Chr1 16597586 G-T Hetero INTERGENIC
SBS Chr1 18369065 G-A Hetero INTERGENIC
SBS Chr1 21390328 G-A Homo INTERGENIC
SBS Chr1 39157170 A-G Hetero INTERGENIC
SBS Chr2 6672568 C-T Hetero INTERGENIC
SBS Chr2 21733463 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g211100
SBS Chr2 22588180 G-A Homo SYNONYMOUS_CODING
SBS Chr2 27453933 C-T Homo INTERGENIC
SBS Chr3 36446924 C-A Homo INTRON
SBS Chr4 1071382 A-T Homo INTERGENIC
SBS Chr4 3565803 G-C Homo INTERGENIC
SBS Chr4 6851348 G-T Homo INTERGENIC
SBS Chr4 9087971 A-C Homo INTERGENIC
SBS Chr4 9640326 G-T Homo INTERGENIC
SBS Chr5 4877156 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g054700
SBS Chr5 13019899 C-T Homo INTERGENIC
SBS Chr5 13019900 C-T Homo INTERGENIC
SBS Chr5 14928570 G-A Homo INTERGENIC
SBS Chr6 17156612 T-G Hetero INTERGENIC
SBS Chr7 917489 C-A Hetero INTERGENIC
SBS Chr7 24458168 G-A Hetero INTERGENIC
SBS Chr8 21068513 G-A Homo INTERGENIC
SBS Chr9 2826051 C-T Homo INTERGENIC
SBS Chr9 4210689 C-G Homo INTERGENIC
SBS Chr9 4482264 C-T Homo INTERGENIC
SBS Chr9 9508032 C-T Homo INTRON
SBS Chr10 16838774 C-T Homo INTERGENIC
SBS Chr11 5148085 G-C Homo INTERGENIC
SBS Chr11 18480404 G-A Homo UTR_3_PRIME
SBS Chr11 26519162 C-A Homo INTERGENIC
SBS Chr12 8300252 G-A Homo INTERGENIC
SBS Chr12 23803474 A-G Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1633019 1633029 10
Deletion Chr6 3190040 3190041 1
Deletion Chr1 6338529 6338546 17
Deletion Chr6 8550001 8599000 48999 2
Deletion Chr8 8726080 8726081 1
Deletion Chr3 9231641 9231645 4
Deletion Chr9 9644646 9644647 1
Deletion Chr12 10000188 10000190 2
Deletion Chr5 10304566 10304567 1
Deletion Chr8 11026197 11026204 7
Deletion Chr5 13040065 13040066 1
Deletion Chr12 17388618 17388620 2
Deletion Chr6 17758788 17758790 2
Deletion Chr3 17935286 17935287 1
Deletion Chr3 23833758 23833775 17
Deletion Chr5 23965997 23965998 1
Deletion Chr2 26513793 26513802 9
Deletion Chr11 28401456 28401457 1
Deletion Chr2 36527026 36527034 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13058529 13058532 2
Insertion Chr2 14390888 14390890 1 OsKitaake02g155775

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12004447	T-A	Hetero	INTERGENIC
SBS	Chr1	12009779	A-C	Hetero	INTERGENIC
SBS	Chr1	15477100	C-A	Hetero	INTERGENIC
SBS	Chr1	16597586	G-T	Hetero	INTERGENIC
SBS	Chr1	18369065	G-A	Hetero	INTERGENIC
SBS	Chr1	21390328	G-A	Homo	INTERGENIC
SBS	Chr1	39157170	A-G	Hetero	INTERGENIC
SBS	Chr2	6672568	C-T	Hetero	INTERGENIC
SBS	Chr2	21733463	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g211100
SBS	Chr2	22588180	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	27453933	C-T	Homo	INTERGENIC
SBS	Chr3	36446924	C-A	Homo	INTRON
SBS	Chr4	1071382	A-T	Homo	INTERGENIC
SBS	Chr4	3565803	G-C	Homo	INTERGENIC
SBS	Chr4	6851348	G-T	Homo	INTERGENIC
SBS	Chr4	9087971	A-C	Homo	INTERGENIC
SBS	Chr4	9640326	G-T	Homo	INTERGENIC
SBS	Chr5	4877156	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g054700
SBS	Chr5	13019899	C-T	Homo	INTERGENIC
SBS	Chr5	13019900	C-T	Homo	INTERGENIC
SBS	Chr5	14928570	G-A	Homo	INTERGENIC
SBS	Chr6	17156612	T-G	Hetero	INTERGENIC
SBS	Chr7	917489	C-A	Hetero	INTERGENIC
SBS	Chr7	24458168	G-A	Hetero	INTERGENIC
SBS	Chr8	21068513	G-A	Homo	INTERGENIC
SBS	Chr9	2826051	C-T	Homo	INTERGENIC
SBS	Chr9	4210689	C-G	Homo	INTERGENIC
SBS	Chr9	4482264	C-T	Homo	INTERGENIC
SBS	Chr9	9508032	C-T	Homo	INTRON
SBS	Chr10	16838774	C-T	Homo	INTERGENIC
SBS	Chr11	5148085	G-C	Homo	INTERGENIC
SBS	Chr11	18480404	G-A	Homo	UTR_3_PRIME
SBS	Chr11	26519162	C-A	Homo	INTERGENIC
SBS	Chr12	8300252	G-A	Homo	INTERGENIC
SBS	Chr12	23803474	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1633019	1633029	10
Deletion	Chr6	3190040	3190041	1
Deletion	Chr1	6338529	6338546	17
Deletion	Chr6	8550001	8599000	48999	2
Deletion	Chr8	8726080	8726081	1
Deletion	Chr3	9231641	9231645	4
Deletion	Chr9	9644646	9644647	1
Deletion	Chr12	10000188	10000190	2
Deletion	Chr5	10304566	10304567	1
Deletion	Chr8	11026197	11026204	7
Deletion	Chr5	13040065	13040066	1
Deletion	Chr12	17388618	17388620	2
Deletion	Chr6	17758788	17758790	2
Deletion	Chr3	17935286	17935287	1
Deletion	Chr3	23833758	23833775	17
Deletion	Chr5	23965997	23965998	1
Deletion	Chr2	26513793	26513802	9
Deletion	Chr11	28401456	28401457	1
Deletion	Chr2	36527026	36527034	8

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes