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Mutant Information

Mutant Name	FN3942-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3942-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6537155 A-G Hetero INTRON
SBS Chr1 26816019 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 30840909 C-T Hetero INTRON
SBS Chr2 2889221 T-A Homo INTERGENIC
SBS Chr2 19270604 C-G Hetero INTERGENIC
SBS Chr3 4428679 C-T Hetero INTERGENIC
SBS Chr3 28020859 C-T Hetero INTERGENIC
SBS Chr4 13032351 T-A Homo INTERGENIC
SBS Chr4 24331126 G-A Hetero INTERGENIC
SBS Chr5 5701281 C-T Homo INTERGENIC
SBS Chr6 163065 T-G Hetero INTRON
SBS Chr6 18727941 A-T Homo INTERGENIC
SBS Chr7 18652080 T-A Hetero INTERGENIC
SBS Chr8 6983858 A-T Homo INTERGENIC
SBS Chr9 5389304 G-A Homo INTRON
SBS Chr9 11756259 C-T Hetero INTERGENIC
SBS Chr10 6024645 A-T Homo SYNONYMOUS_CODING
SBS Chr11 6298923 T-A Hetero INTERGENIC
SBS Chr11 15414162 A-T Hetero INTERGENIC
SBS Chr11 18524962 A-T Hetero INTERGENIC
SBS Chr11 25575675 G-A Hetero INTERGENIC
SBS Chr11 28758598 C-T Hetero INTERGENIC
SBS Chr12 5568164 T-G Homo INTERGENIC
SBS Chr12 16421475 G-A Homo INTERGENIC
SBS Chr12 23532662 C-T Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4710168 4710176 8
Deletion Chr10 5340632 5340633 1
Deletion Chr6 5352474 5352477 3
Deletion Chr9 5947332 5947334 2
Deletion Chr3 11746411 11746412 1
Deletion Chr10 16845366 16845370 4
Deletion Chr1 17183567 17183887 320
Deletion Chr9 19261196 19261205 9
Deletion Chr4 19418960 19418961 1
Deletion Chr3 21000968 21000973 5
Deletion Chr12 23533232 23533239 7
Deletion Chr11 24403904 24403912 8
Deletion Chr3 25807400 25807402 2
Deletion Chr1 27451068 27451076 8
Deletion Chr2 29196109 29196110 1
Deletion Chr1 29726620 29726632 12

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11559956 11559959 2
Insertion Chr6 22816799 22816802 2
Insertion Chr11 21806578 21806581 2
Insertion Chr12 1818346 1818348 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 21967147 22359434 OsKitaake03g243100

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 6874724 Chr2 28266965
Translocation Chr7 6875031 Chr2 28266966
Translocation Chr11 8209192 Chr3 21967153
Translocation Chr11 8209550 Chr3 22359629 OsKitaake11g090100
Translocation Chr11 16052784 Chr9 564984 OsKitaake11g128700
Translocation Chr11 16052943 Chr9 564986 OsKitaake11g128700
Translocation Chr9 19910750 Chr7 6874714 OsKitaake09g165800
Translocation Chr9 19910767 Chr7 6874454 OsKitaake09g165800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6537155	A-G	Hetero	INTRON
SBS	Chr1	26816019	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	30840909	C-T	Hetero	INTRON
SBS	Chr2	2889221	T-A	Homo	INTERGENIC
SBS	Chr2	19270604	C-G	Hetero	INTERGENIC
SBS	Chr3	4428679	C-T	Hetero	INTERGENIC
SBS	Chr3	28020859	C-T	Hetero	INTERGENIC
SBS	Chr4	13032351	T-A	Homo	INTERGENIC
SBS	Chr4	24331126	G-A	Hetero	INTERGENIC
SBS	Chr5	5701281	C-T	Homo	INTERGENIC
SBS	Chr6	163065	T-G	Hetero	INTRON
SBS	Chr6	18727941	A-T	Homo	INTERGENIC
SBS	Chr7	18652080	T-A	Hetero	INTERGENIC
SBS	Chr8	6983858	A-T	Homo	INTERGENIC
SBS	Chr9	5389304	G-A	Homo	INTRON
SBS	Chr9	11756259	C-T	Hetero	INTERGENIC
SBS	Chr10	6024645	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	6298923	T-A	Hetero	INTERGENIC
SBS	Chr11	15414162	A-T	Hetero	INTERGENIC
SBS	Chr11	18524962	A-T	Hetero	INTERGENIC
SBS	Chr11	25575675	G-A	Hetero	INTERGENIC
SBS	Chr11	28758598	C-T	Hetero	INTERGENIC
SBS	Chr12	5568164	T-G	Homo	INTERGENIC
SBS	Chr12	16421475	G-A	Homo	INTERGENIC
SBS	Chr12	23532662	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4710168	4710176	8
Deletion	Chr10	5340632	5340633	1
Deletion	Chr6	5352474	5352477	3
Deletion	Chr9	5947332	5947334	2
Deletion	Chr3	11746411	11746412	1
Deletion	Chr10	16845366	16845370	4
Deletion	Chr1	17183567	17183887	320
Deletion	Chr9	19261196	19261205	9
Deletion	Chr4	19418960	19418961	1
Deletion	Chr3	21000968	21000973	5
Deletion	Chr12	23533232	23533239	7
Deletion	Chr11	24403904	24403912	8
Deletion	Chr3	25807400	25807402	2
Deletion	Chr1	27451068	27451076	8
Deletion	Chr2	29196109	29196110	1
Deletion	Chr1	29726620	29726632	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21967147	22359434	OsKitaake03g243100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes