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Mutant Information

Mutant Name	FN3943-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3943-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3480005 G-A Hetero INTERGENIC
SBS Chr2 22015074 A-T Hetero INTRON
SBS Chr3 13739453 A-T Homo INTERGENIC
SBS Chr3 26041595 C-T Hetero INTERGENIC
SBS Chr3 37304953 G-A Homo INTERGENIC
SBS Chr4 33126864 T-C Hetero INTERGENIC
SBS Chr4 33713927 G-A Hetero INTRON
SBS Chr5 29725086 C-T Hetero INTERGENIC
SBS Chr6 14660919 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 23833752 C-T Hetero INTERGENIC
SBS Chr6 27209315 T-C Hetero INTERGENIC
SBS Chr6 28340718 G-A Hetero INTERGENIC
SBS Chr7 27858759 G-C Homo INTERGENIC
SBS Chr8 21781705 A-T Hetero INTERGENIC
SBS Chr9 3990741 A-G Hetero INTERGENIC
SBS Chr10 3974077 C-A Hetero SPLICE_SITE_ACCEPTOR OsKitaake10g030000
SBS Chr10 11064080 G-A Hetero INTERGENIC
SBS Chr12 26439836 C-G Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 6193411 6193428 17
Deletion Chr11 8851780 8851782 2
Deletion Chr2 11517531 11517539 8
Deletion Chr12 12524803 12524806 3
Deletion Chr7 16412542 16412543 1
Deletion Chr6 18151930 18151939 9
Deletion Chr4 21954570 21954579 9 OsKitaake04g127300
Deletion Chr2 27898432 27898433 1
Deletion Chr2 36045510 36045512 2 OsKitaake02g379601
Deletion Chr1 42301384 42301406 22

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22923228 22923235 6
Insertion Chr1 41340075 41340078 2
Insertion Chr3 29181541 29181544 2
Insertion Chr4 6703772 6703775 2
Insertion Chr6 26228257 26228260 2
Insertion Chr11 20604210 20604213 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3480005	G-A	Hetero	INTERGENIC
SBS	Chr2	22015074	A-T	Hetero	INTRON
SBS	Chr3	13739453	A-T	Homo	INTERGENIC
SBS	Chr3	26041595	C-T	Hetero	INTERGENIC
SBS	Chr3	37304953	G-A	Homo	INTERGENIC
SBS	Chr4	33126864	T-C	Hetero	INTERGENIC
SBS	Chr4	33713927	G-A	Hetero	INTRON
SBS	Chr5	29725086	C-T	Hetero	INTERGENIC
SBS	Chr6	14660919	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	23833752	C-T	Hetero	INTERGENIC
SBS	Chr6	27209315	T-C	Hetero	INTERGENIC
SBS	Chr6	28340718	G-A	Hetero	INTERGENIC
SBS	Chr7	27858759	G-C	Homo	INTERGENIC
SBS	Chr8	21781705	A-T	Hetero	INTERGENIC
SBS	Chr9	3990741	A-G	Hetero	INTERGENIC
SBS	Chr10	3974077	C-A	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake10g030000
SBS	Chr10	11064080	G-A	Hetero	INTERGENIC
SBS	Chr12	26439836	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	6193411	6193428	17
Deletion	Chr11	8851780	8851782	2
Deletion	Chr2	11517531	11517539	8
Deletion	Chr12	12524803	12524806	3
Deletion	Chr7	16412542	16412543	1
Deletion	Chr6	18151930	18151939	9
Deletion	Chr4	21954570	21954579	9	OsKitaake04g127300
Deletion	Chr2	27898432	27898433	1
Deletion	Chr2	36045510	36045512	2	OsKitaake02g379601
Deletion	Chr1	42301384	42301406	22

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes