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| Mutant Information |
|---|
| Mutant Name | FN3944-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3944-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2144061 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 4291461 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32198503 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 3255897 | T-A | Homo | INTRON | |
| SBS | Chr2 | 3255911 | T-A | Homo | INTRON | |
| SBS | Chr2 | 19132233 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5478821 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 5939533 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 11717979 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 37367000 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 2126078 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35269389 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3991533 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 5808423 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 5808431 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22868150 | G-T | Homo | INTRON | |
| SBS | Chr6 | 13813058 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 17785177 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21063022 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6519826 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11459509 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27508065 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28337518 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 16575792 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18323340 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21900911 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 4424867 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11471026 | A-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 20692 | 21044 | 352 | |
| Deletion | Chr8 | 3176159 | 3176167 | 8 | |
| Deletion | Chr3 | 4499797 | 4499803 | 6 | |
| Deletion | Chr8 | 5407640 | 5407669 | 29 | |
| Deletion | Chr2 | 7571717 | 7571719 | 2 | |
| Deletion | Chr7 | 8709318 | 8709323 | 5 | |
| Deletion | Chr6 | 14571283 | 14571286 | 3 | |
| Deletion | Chr2 | 16411001 | 16522000 | 110999 | 6 |
| Deletion | Chr6 | 17065226 | 17065232 | 6 | |
| Deletion | Chr6 | 20151306 | 20151307 | 1 | |
| Deletion | Chr9 | 21319343 | 21319373 | 30 | |
| Deletion | Chr6 | 21589261 | 21589262 | 1 | OsKitaake06g191000 |
| Deletion | Chr2 | 22060943 | 22060945 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 18234954 | 18234962 | 7 | |
| Insertion | Chr6 | 6853143 | 6853146 | 2 | |
| Insertion | Chr8 | 10603253 | 10603258 | 4 | |
| Insertion | Chr9 | 5270087 | 5270090 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 2624894 | 2671241 | |
| Inversion | Chr2 | 2624901 | 2671242 | |
| Inversion | Chr2 | 16409399 | 17253444 | 2 |
| Inversion | Chr2 | 16521316 | 17253603 | OsKitaake02g173700 |