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| Mutant Information |
|---|
| Mutant Name | FN3946-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3946-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4515784 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 8818070 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23015725 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 41122172 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41122173 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 4096284 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 11476635 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19666431 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 26406668 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26406669 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26515168 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 9105877 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3170899 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 9709866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17569994 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g134700 |
| SBS | Chr6 | 25880776 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 4810266 | G-A | Homo | INTRON | |
| SBS | Chr7 | 18625661 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4792333 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 27512087 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 4985657 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g028800 |
| SBS | Chr9 | 9695757 | C-G | Hetero | INTRON | |
| SBS | Chr10 | 7198087 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 8847613 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4849520 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14674067 | G-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2800367 | 2800372 | 5 | |
| Deletion | Chr8 | 3604001 | 3629000 | 24999 | 4 |
| Deletion | Chr12 | 6233901 | 6233911 | 10 | |
| Deletion | Chr5 | 7897956 | 7897958 | 2 | |
| Deletion | Chr4 | 8507515 | 8507521 | 6 | |
| Deletion | Chr6 | 13898060 | 13898151 | 91 | |
| Deletion | Chr6 | 14886843 | 14886860 | 17 | |
| Deletion | Chr12 | 16403741 | 16403754 | 13 | |
| Deletion | Chr10 | 16805734 | 16805752 | 18 | |
| Deletion | Chr1 | 20969281 | 20969284 | 3 | |
| Deletion | Chr10 | 22513342 | 22513343 | 1 | |
| Deletion | Chr7 | 24405762 | 24405774 | 12 | |
| Deletion | Chr7 | 24408808 | 24408811 | 3 | OsKitaake07g217400 |
| Deletion | Chr7 | 24786341 | 24786350 | 9 | |
| Deletion | Chr1 | 27194734 | 27194736 | 2 | |
| Deletion | Chr3 | 31033345 | 31033350 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20919977 | 20919981 | 3 | |
| Insertion | Chr10 | 8005993 | 8005997 | 3 | |
| Insertion | Chr11 | 28245334 | 28245337 | 2 | |
| Insertion | Chr12 | 5762436 | 5762439 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 14179136 | 14649665 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 4256532 | Chr3 | 19805558 | |
| Translocation | Chr8 | 4256976 | Chr3 | 19805559 |