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| Mutant Information |
|---|
| Mutant Name | FN3947-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3947-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22334960 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g213600 |
| SBS | Chr1 | 25323210 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 29977529 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37366460 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 3216559 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3602122 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 35666930 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 36691815 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18812377 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 31167108 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 33175216 | A-T | Homo | INTRON | |
| SBS | Chr3 | 33175217 | G-A | Homo | INTRON | |
| SBS | Chr4 | 12685555 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19931417 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 2701291 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28900532 | G-T | Hetero | INTRON | |
| SBS | Chr6 | 2189412 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 2189413 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 2189414 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 9561896 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 9783810 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 21432702 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4016799 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 10727737 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 4172313 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 16098515 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g115400 |
| SBS | Chr10 | 7803628 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 15931318 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23577019 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10992768 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18526570 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 23261972 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 25149518 | G-A | Hetero | SYNONYMOUS_CODING |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 73659 | 73660 | 1 | |
| Deletion | Chr12 | 2572366 | 2572370 | 4 | |
| Deletion | Chr3 | 3401856 | 3401861 | 5 | |
| Deletion | Chr7 | 8632884 | 8632887 | 3 | |
| Deletion | Chr9 | 8911061 | 8911062 | 1 | |
| Deletion | Chr8 | 10253150 | 10253152 | 2 | |
| Deletion | Chr11 | 12958776 | 12958789 | 13 | |
| Deletion | Chr9 | 14868492 | 14868502 | 10 | OsKitaake09g102300 |
| Deletion | Chr11 | 22768254 | 22768257 | 3 | |
| Deletion | Chr7 | 23401494 | 23401495 | 1 | |
| Deletion | Chr8 | 23679618 | 23679622 | 4 | |
| Deletion | Chr5 | 26469233 | 26469235 | 2 | |
| Deletion | Chr4 | 26800591 | 26800595 | 4 | |
| Deletion | Chr7 | 28438470 | 28438476 | 6 | OsKitaake07g270200 |
| Deletion | Chr1 | 29481332 | 29481333 | 1 | |
| Deletion | Chr3 | 32932685 | 32932703 | 18 | |
| Deletion | Chr1 | 39128307 | 39128312 | 5 | |
| Deletion | Chr1 | 40605950 | 40605951 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 29469426 | 29469428 | 1 | |
| Insertion | Chr5 | 11573950 | 11573953 | 2 | |
| Insertion | Chr6 | 23441270 | 23441273 | 2 |