Search Kitaake

Mutant Information

Mutant Name	FN3948-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3948-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16996625 C-T Homo INTERGENIC
SBS Chr1 19391387 T-A Hetero INTERGENIC
SBS Chr2 6632465 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 7371536 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g098300
SBS Chr2 8641804 T-C Hetero INTERGENIC
SBS Chr2 14796776 C-A Hetero INTERGENIC
SBS Chr3 15146101 G-C Hetero SPLICE_SITE_REGION
SBS Chr3 15570449 C-T Hetero INTERGENIC
SBS Chr3 17028935 A-G Hetero INTERGENIC
SBS Chr3 20162294 C-G Hetero INTERGENIC
SBS Chr3 23544386 G-A Hetero INTERGENIC
SBS Chr3 24457245 G-T Hetero INTERGENIC
SBS Chr3 31978547 A-T Hetero INTERGENIC
SBS Chr4 2908349 C-A Homo INTERGENIC
SBS Chr4 2908351 G-T Homo INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr4 32222513 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr5 11141114 G-A Hetero INTERGENIC
SBS Chr5 11141115 G-A Hetero INTERGENIC
SBS Chr7 13046862 A-T Homo INTERGENIC
SBS Chr7 20195664 A-G Hetero INTERGENIC
SBS Chr8 7392145 C-T Hetero INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 19239032 C-A Hetero INTERGENIC
SBS Chr9 10188653 T-A Hetero INTERGENIC
SBS Chr9 18579444 C-T Homo UTR_3_PRIME
SBS Chr10 15084826 G-A Hetero INTERGENIC
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 11141038 C-T Homo INTERGENIC
SBS Chr11 19257604 T-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4918166 4918167 1
Deletion Chr5 7212922 7212938 16
Deletion Chr12 7402251 7402259 8
Deletion Chr1 7718852 7718853 1
Deletion Chr5 8182826 8182827 1
Deletion Chr7 10099090 10099095 5
Deletion Chr1 13428451 13428452 1 OsKitaake01g156400
Deletion Chr2 14059441 14059447 6
Deletion Chr10 16744380 16744382 2
Deletion Chr6 17787580 17787582 2
Deletion Chr4 20489475 20489477 2
Deletion Chr6 21117515 21117517 2 OsKitaake06g187500
Deletion Chr3 23083237 23083248 11
Deletion Chr2 25245102 25245105 3
Deletion Chr4 36569555 36569574 19
Deletion Chr1 36645084 36645103 19

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17314186 17314189 2
Insertion Chr6 1745147 1745150 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 3023727 3101934 OsKitaake09g016100
Inversion Chr9 3023731 3102070 OsKitaake09g016100
Inversion Chr3 7999596 8197603 OsKitaake03g110800
Inversion Chr3 7999609 8197613 OsKitaake03g110800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16996625	C-T	Homo	INTERGENIC
SBS	Chr1	19391387	T-A	Hetero	INTERGENIC
SBS	Chr2	6632465	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	7371536	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g098300
SBS	Chr2	8641804	T-C	Hetero	INTERGENIC
SBS	Chr2	14796776	C-A	Hetero	INTERGENIC
SBS	Chr3	15146101	G-C	Hetero	SPLICE_SITE_REGION
SBS	Chr3	15570449	C-T	Hetero	INTERGENIC
SBS	Chr3	17028935	A-G	Hetero	INTERGENIC
SBS	Chr3	20162294	C-G	Hetero	INTERGENIC
SBS	Chr3	23544386	G-A	Hetero	INTERGENIC
SBS	Chr3	24457245	G-T	Hetero	INTERGENIC
SBS	Chr3	31978547	A-T	Hetero	INTERGENIC
SBS	Chr4	2908349	C-A	Homo	INTERGENIC
SBS	Chr4	2908351	G-T	Homo	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr4	32222513	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr5	11141114	G-A	Hetero	INTERGENIC
SBS	Chr5	11141115	G-A	Hetero	INTERGENIC
SBS	Chr7	13046862	A-T	Homo	INTERGENIC
SBS	Chr7	20195664	A-G	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Hetero	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	19239032	C-A	Hetero	INTERGENIC
SBS	Chr9	10188653	T-A	Hetero	INTERGENIC
SBS	Chr9	18579444	C-T	Homo	UTR_3_PRIME
SBS	Chr10	15084826	G-A	Hetero	INTERGENIC
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	11141038	C-T	Homo	INTERGENIC
SBS	Chr11	19257604	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4918166	4918167	1
Deletion	Chr5	7212922	7212938	16
Deletion	Chr12	7402251	7402259	8
Deletion	Chr1	7718852	7718853	1
Deletion	Chr5	8182826	8182827	1
Deletion	Chr7	10099090	10099095	5
Deletion	Chr1	13428451	13428452	1	OsKitaake01g156400
Deletion	Chr2	14059441	14059447	6
Deletion	Chr10	16744380	16744382	2
Deletion	Chr6	17787580	17787582	2
Deletion	Chr4	20489475	20489477	2
Deletion	Chr6	21117515	21117517	2	OsKitaake06g187500
Deletion	Chr3	23083237	23083248	11
Deletion	Chr2	25245102	25245105	3
Deletion	Chr4	36569555	36569574	19
Deletion	Chr1	36645084	36645103	19

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3023727	3101934	OsKitaake09g016100
Inversion	Chr9	3023731	3102070	OsKitaake09g016100
Inversion	Chr3	7999596	8197603	OsKitaake03g110800
Inversion	Chr3	7999609	8197613	OsKitaake03g110800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes