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Mutant Information

Mutant Name	FN3949-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3949-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13772610 T-C Homo INTRON
SBS Chr2 17326774 G-A Homo INTERGENIC
SBS Chr3 10635155 C-T Hetero INTERGENIC
SBS Chr4 9653635 T-C Homo INTERGENIC
SBS Chr4 26499422 T-C Hetero INTERGENIC
SBS Chr4 32088819 C-T Hetero INTERGENIC
SBS Chr5 19556303 A-G Homo INTRON
SBS Chr5 25961038 T-C Homo INTERGENIC
SBS Chr7 770229 C-A Hetero INTERGENIC
SBS Chr7 6007781 T-C Hetero SPLICE_SITE_REGION
SBS Chr7 12254799 C-T Homo INTERGENIC
SBS Chr8 25753447 G-A Hetero INTERGENIC
SBS Chr8 28446676 G-A Hetero UTR_3_PRIME
SBS Chr10 18769030 A-G Hetero INTERGENIC
SBS Chr10 19653443 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g145201
SBS Chr10 21940114 C-A Hetero INTERGENIC
SBS Chr12 6654972 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g076250
SBS Chr12 9051886 G-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1731001 2065000 333999 53
Deletion Chr9 2484610 2484611 1
Deletion Chr5 3688165 3688173 8
Deletion Chr5 7991291 7991292 1
Deletion Chr5 8109206 8109213 7
Deletion Chr7 11858001 11901000 42999 3
Deletion Chr8 12515794 12515801 7
Deletion Chr12 14229925 14229942 17
Deletion Chr5 15076374 15076377 3
Deletion Chr9 15244429 15244433 4
Deletion Chr4 20651441 20651450 9
Deletion Chr5 20655519 20655523 4 OsKitaake05g164801
Deletion Chr2 21192592 21192608 16
Deletion Chr9 22569108 22569109 1
Deletion Chr1 26588174 26588175 1
Deletion Chr8 27647869 27647871 2
Deletion Chr4 30682557 30682567 10
Deletion Chr1 35876452 35876453 1 OsKitaake01g380200
Deletion Chr1 41148124 41148126 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 7363226 7363229 2
Insertion Chr11 16648102 16648105 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6725979 Chr3 32379389 OsKitaake03g342800
Translocation Chr5 17195087 Chr1 29146031
Translocation Chr5 17198515 Chr1 29146047
Translocation Chr5 17198521 Chr1 30589524 OsKitaake01g303000
Translocation Chr5 17199480 Chr1 30589526 OsKitaake01g303000
Translocation Chr10 19417580 Chr2 24882236
Translocation Chr10 19417586 Chr2 24882424

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13772610	T-C	Homo	INTRON
SBS	Chr2	17326774	G-A	Homo	INTERGENIC
SBS	Chr3	10635155	C-T	Hetero	INTERGENIC
SBS	Chr4	9653635	T-C	Homo	INTERGENIC
SBS	Chr4	26499422	T-C	Hetero	INTERGENIC
SBS	Chr4	32088819	C-T	Hetero	INTERGENIC
SBS	Chr5	19556303	A-G	Homo	INTRON
SBS	Chr5	25961038	T-C	Homo	INTERGENIC
SBS	Chr7	770229	C-A	Hetero	INTERGENIC
SBS	Chr7	6007781	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr7	12254799	C-T	Homo	INTERGENIC
SBS	Chr8	25753447	G-A	Hetero	INTERGENIC
SBS	Chr8	28446676	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	18769030	A-G	Hetero	INTERGENIC
SBS	Chr10	19653443	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g145201
SBS	Chr10	21940114	C-A	Hetero	INTERGENIC
SBS	Chr12	6654972	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g076250
SBS	Chr12	9051886	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1731001	2065000	333999	53
Deletion	Chr9	2484610	2484611	1
Deletion	Chr5	3688165	3688173	8
Deletion	Chr5	7991291	7991292	1
Deletion	Chr5	8109206	8109213	7
Deletion	Chr7	11858001	11901000	42999	3
Deletion	Chr8	12515794	12515801	7
Deletion	Chr12	14229925	14229942	17
Deletion	Chr5	15076374	15076377	3
Deletion	Chr9	15244429	15244433	4
Deletion	Chr4	20651441	20651450	9
Deletion	Chr5	20655519	20655523	4	OsKitaake05g164801
Deletion	Chr2	21192592	21192608	16
Deletion	Chr9	22569108	22569109	1
Deletion	Chr1	26588174	26588175	1
Deletion	Chr8	27647869	27647871	2
Deletion	Chr4	30682557	30682567	10
Deletion	Chr1	35876452	35876453	1	OsKitaake01g380200
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6725979	Chr3	32379389	OsKitaake03g342800
Translocation	Chr5	17195087	Chr1	29146031
Translocation	Chr5	17198515	Chr1	29146047
Translocation	Chr5	17198521	Chr1	30589524	OsKitaake01g303000
Translocation	Chr5	17199480	Chr1	30589526	OsKitaake01g303000
Translocation	Chr10	19417580	Chr2	24882236
Translocation	Chr10	19417586	Chr2	24882424

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes