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Mutant Information

Mutant Name	FN395-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN395-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13614586 C-A Hetero INTERGENIC
SBS Chr1 28972146 T-C Hetero INTRON
SBS Chr1 37447281 C-T Homo INTERGENIC
SBS Chr2 5593012 G-A Hetero INTRON
SBS Chr2 10632021 G-T Hetero INTERGENIC
SBS Chr2 10632022 A-T Hetero INTERGENIC
SBS Chr2 10887942 G-T Hetero INTRON
SBS Chr2 24346181 A-C Hetero INTRON
SBS Chr3 2101823 A-T Hetero UTR_3_PRIME
SBS Chr3 4735170 G-T Homo INTRON
SBS Chr3 10717387 G-T Hetero UTR_3_PRIME
SBS Chr3 26819889 A-G Hetero INTERGENIC
SBS Chr3 32698282 C-G Homo INTERGENIC
SBS Chr4 8410557 C-T Hetero INTERGENIC
SBS Chr4 17952126 G-C Homo INTERGENIC
SBS Chr4 28412200 G-A Homo INTERGENIC
SBS Chr4 29038454 A-T Homo INTERGENIC
SBS Chr4 31345794 T-C Homo INTRON
SBS Chr4 34760823 T-A Homo INTERGENIC
SBS Chr5 11931663 A-G Hetero INTERGENIC
SBS Chr5 15509420 G-A Hetero INTERGENIC
SBS Chr6 12491686 T-A Homo INTERGENIC
SBS Chr6 12491687 C-A Homo INTERGENIC
SBS Chr6 16572248 C-T Homo INTERGENIC
SBS Chr7 16876931 G-A Hetero INTERGENIC
SBS Chr9 7882743 A-T Hetero SYNONYMOUS_CODING
SBS Chr9 14383718 C-A Hetero INTRON
SBS Chr11 25096756 C-T Homo INTERGENIC
SBS Chr12 7695541 G-A Homo INTERGENIC
SBS Chr12 12319075 G-C Hetero INTERGENIC
SBS Chr12 17822247 G-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3349243 3349257 14
Deletion Chr10 3760554 3760564 10
Deletion Chr9 10826542 10826543 1
Deletion Chr4 10942957 10942961 4
Deletion Chr12 13887962 13887972 10
Deletion Chr3 14798500 14798504 4
Deletion Chr6 16541809 16541811 2
Deletion Chr6 22616347 22616353 6
Deletion Chr2 25175033 25175034 1
Deletion Chr6 25499327 25499329 2
Deletion Chr5 25699603 25699605 2
Deletion Chr12 26135058 26135062 4
Deletion Chr2 30412717 30412731 14
Deletion Chr2 31808575 31808585 10
Deletion Chr1 38181127 38181135 8
Deletion Chr1 41780166 41780175 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4440892 4440895 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 12107618 Chr3 16906639 OsKitaake03g211100
Translocation Chr7 12107635 Chr3 16906107 OsKitaake03g211100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13614586	C-A	Hetero	INTERGENIC
SBS	Chr1	28972146	T-C	Hetero	INTRON
SBS	Chr1	37447281	C-T	Homo	INTERGENIC
SBS	Chr2	5593012	G-A	Hetero	INTRON
SBS	Chr2	10632021	G-T	Hetero	INTERGENIC
SBS	Chr2	10632022	A-T	Hetero	INTERGENIC
SBS	Chr2	10887942	G-T	Hetero	INTRON
SBS	Chr2	24346181	A-C	Hetero	INTRON
SBS	Chr3	2101823	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	4735170	G-T	Homo	INTRON
SBS	Chr3	10717387	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	26819889	A-G	Hetero	INTERGENIC
SBS	Chr3	32698282	C-G	Homo	INTERGENIC
SBS	Chr4	8410557	C-T	Hetero	INTERGENIC
SBS	Chr4	17952126	G-C	Homo	INTERGENIC
SBS	Chr4	28412200	G-A	Homo	INTERGENIC
SBS	Chr4	29038454	A-T	Homo	INTERGENIC
SBS	Chr4	31345794	T-C	Homo	INTRON
SBS	Chr4	34760823	T-A	Homo	INTERGENIC
SBS	Chr5	11931663	A-G	Hetero	INTERGENIC
SBS	Chr5	15509420	G-A	Hetero	INTERGENIC
SBS	Chr6	12491686	T-A	Homo	INTERGENIC
SBS	Chr6	12491687	C-A	Homo	INTERGENIC
SBS	Chr6	16572248	C-T	Homo	INTERGENIC
SBS	Chr7	16876931	G-A	Hetero	INTERGENIC
SBS	Chr9	7882743	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	14383718	C-A	Hetero	INTRON
SBS	Chr11	25096756	C-T	Homo	INTERGENIC
SBS	Chr12	7695541	G-A	Homo	INTERGENIC
SBS	Chr12	12319075	G-C	Hetero	INTERGENIC
SBS	Chr12	17822247	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3349243	3349257	14
Deletion	Chr10	3760554	3760564	10
Deletion	Chr9	10826542	10826543	1
Deletion	Chr4	10942957	10942961	4
Deletion	Chr12	13887962	13887972	10
Deletion	Chr3	14798500	14798504	4
Deletion	Chr6	16541809	16541811	2
Deletion	Chr6	22616347	22616353	6
Deletion	Chr2	25175033	25175034	1
Deletion	Chr6	25499327	25499329	2
Deletion	Chr5	25699603	25699605	2
Deletion	Chr12	26135058	26135062	4
Deletion	Chr2	30412717	30412731	14
Deletion	Chr2	31808575	31808585	10
Deletion	Chr1	38181127	38181135	8
Deletion	Chr1	41780166	41780175	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	12107618	Chr3	16906639	OsKitaake03g211100
Translocation	Chr7	12107635	Chr3	16906107	OsKitaake03g211100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes