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Mutant Information

Mutant Name	FN3950-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3950-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3686469 G-C Hetero INTERGENIC
SBS Chr1 25257148 G-C Hetero INTERGENIC
SBS Chr1 32114623 C-A Hetero INTRON
SBS Chr2 10200813 C-T Hetero INTERGENIC
SBS Chr2 23653768 G-A Homo INTERGENIC
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr2 36421277 C-T Homo INTERGENIC
SBS Chr3 3646829 A-C Homo SYNONYMOUS_CODING
SBS Chr3 21424943 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g236100
SBS Chr4 1687699 C-T Homo INTERGENIC
SBS Chr4 19388302 G-A Hetero INTERGENIC
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr5 14779195 A-G Hetero INTRON
SBS Chr5 17653731 A-C Hetero INTERGENIC
SBS Chr5 18791240 G-A Hetero INTERGENIC
SBS Chr5 21746590 G-A Hetero INTERGENIC
SBS Chr6 11856516 C-A Hetero INTERGENIC
SBS Chr7 2918715 C-G Homo INTERGENIC
SBS Chr7 6425976 G-A Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 9111768 A-T Hetero INTERGENIC
SBS Chr7 14469934 C-T Hetero INTERGENIC
SBS Chr7 24564665 T-C Homo INTERGENIC
SBS Chr8 6321834 T-C Homo INTERGENIC
SBS Chr8 9644281 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g090700
SBS Chr8 9717424 C-T Homo INTERGENIC
SBS Chr8 16643553 C-T Hetero INTERGENIC
SBS Chr9 3726734 C-T Hetero INTERGENIC
SBS Chr9 7944905 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g045000
SBS Chr9 22043498 T-C Homo INTERGENIC
SBS Chr10 6365474 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g043200
SBS Chr10 16424059 G-C Hetero INTERGENIC
SBS Chr10 17759178 A-G Hetero INTERGENIC
SBS Chr11 10384936 C-T Hetero INTERGENIC
SBS Chr11 25339696 A-C Homo INTRON
SBS Chr11 28235691 G-T Hetero INTERGENIC
SBS Chr11 28304929 C-T Hetero STOP_GAINED OsKitaake11g232400
SBS Chr12 11762880 A-T Homo INTERGENIC
SBS Chr12 15330546 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2140390 2140391 1
Deletion Chr1 4046885 4046886 1
Deletion Chr10 8311744 8311754 10
Deletion Chr12 12107053 12107055 2
Deletion Chr10 15124289 15124290 1
Deletion Chr8 15422057 15422072 15
Deletion Chr2 17547492 17547498 6
Deletion Chr6 18384104 18384128 24
Deletion Chr4 21992492 21992493 1
Deletion Chr7 24658086 24658090 4
Deletion Chr6 26292210 26292211 1 OsKitaake06g235500
Deletion Chr11 26915220 26915229 9
Deletion Chr5 29219645 29219655 10
Deletion Chr3 30125655 30125656 1
Deletion Chr1 37164224 37164227 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 12307851 12307853 1
Insertion Chr10 12017572 12017574 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 24024504 24366052 OsKitaake02g236100
Inversion Chr2 24024508 24366055 OsKitaake02g236100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 124220 Chr8 10358129
Translocation Chr10 124225 Chr8 10356916

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3686469	G-C	Hetero	INTERGENIC
SBS	Chr1	25257148	G-C	Hetero	INTERGENIC
SBS	Chr1	32114623	C-A	Hetero	INTRON
SBS	Chr2	10200813	C-T	Hetero	INTERGENIC
SBS	Chr2	23653768	G-A	Homo	INTERGENIC
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr2	36421277	C-T	Homo	INTERGENIC
SBS	Chr3	3646829	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	21424943	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g236100
SBS	Chr4	1687699	C-T	Homo	INTERGENIC
SBS	Chr4	19388302	G-A	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr5	14779195	A-G	Hetero	INTRON
SBS	Chr5	17653731	A-C	Hetero	INTERGENIC
SBS	Chr5	18791240	G-A	Hetero	INTERGENIC
SBS	Chr5	21746590	G-A	Hetero	INTERGENIC
SBS	Chr6	11856516	C-A	Hetero	INTERGENIC
SBS	Chr7	2918715	C-G	Homo	INTERGENIC
SBS	Chr7	6425976	G-A	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	9111768	A-T	Hetero	INTERGENIC
SBS	Chr7	14469934	C-T	Hetero	INTERGENIC
SBS	Chr7	24564665	T-C	Homo	INTERGENIC
SBS	Chr8	6321834	T-C	Homo	INTERGENIC
SBS	Chr8	9644281	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g090700
SBS	Chr8	9717424	C-T	Homo	INTERGENIC
SBS	Chr8	16643553	C-T	Hetero	INTERGENIC
SBS	Chr9	3726734	C-T	Hetero	INTERGENIC
SBS	Chr9	7944905	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g045000
SBS	Chr9	22043498	T-C	Homo	INTERGENIC
SBS	Chr10	6365474	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g043200
SBS	Chr10	16424059	G-C	Hetero	INTERGENIC
SBS	Chr10	17759178	A-G	Hetero	INTERGENIC
SBS	Chr11	10384936	C-T	Hetero	INTERGENIC
SBS	Chr11	25339696	A-C	Homo	INTRON
SBS	Chr11	28235691	G-T	Hetero	INTERGENIC
SBS	Chr11	28304929	C-T	Hetero	STOP_GAINED	OsKitaake11g232400
SBS	Chr12	11762880	A-T	Homo	INTERGENIC
SBS	Chr12	15330546	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2140390	2140391	1
Deletion	Chr1	4046885	4046886	1
Deletion	Chr10	8311744	8311754	10
Deletion	Chr12	12107053	12107055	2
Deletion	Chr10	15124289	15124290	1
Deletion	Chr8	15422057	15422072	15
Deletion	Chr2	17547492	17547498	6
Deletion	Chr6	18384104	18384128	24
Deletion	Chr4	21992492	21992493	1
Deletion	Chr7	24658086	24658090	4
Deletion	Chr6	26292210	26292211	1	OsKitaake06g235500
Deletion	Chr11	26915220	26915229	9
Deletion	Chr5	29219645	29219655	10
Deletion	Chr3	30125655	30125656	1
Deletion	Chr1	37164224	37164227	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	24024504	24366052	OsKitaake02g236100
Inversion	Chr2	24024508	24366055	OsKitaake02g236100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes