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| Mutant Information |
|---|
| Mutant Name | FN3951-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3951-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2811277 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 8183644 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 11245472 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 21804800 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 4033708 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 35641278 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24784995 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 24822471 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29106336 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g302300 |
| SBS | Chr4 | 3377630 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 22667096 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10637381 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15642789 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 22163779 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12339036 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 12368206 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 12368213 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 30413952 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2006352 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15803403 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 22932207 | A-C | Homo | INTRON | |
| SBS | Chr7 | 24498339 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 17274750 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 7426250 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11479624 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13600602 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15167873 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 15313028 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g124200 |
| SBS | Chr11 | 25832818 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27041047 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 21020813 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21104090 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 8267236 | 8267242 | 6 | |
| Deletion | Chr8 | 8689734 | 8689736 | 2 | |
| Deletion | Chr4 | 9107556 | 9107558 | 2 | |
| Deletion | Chr2 | 16811001 | 17075000 | 263999 | 9 |
| Deletion | Chr4 | 17615350 | 17615363 | 13 | |
| Deletion | Chr7 | 18517005 | 18517008 | 3 | OsKitaake07g150500 |
| Deletion | Chr6 | 19698001 | 19911000 | 212999 | 18 |
| Deletion | Chr8 | 21254416 | 21254424 | 8 | |
| Deletion | Chr3 | 22580033 | 22580034 | 1 | |
| Deletion | Chr11 | 27519356 | 27519364 | 8 | |
| Deletion | Chr4 | 29445038 | 29445039 | 1 | |
| Deletion | Chr1 | 30622079 | 30622080 | 1 | OsKitaake01g303300 |
| Deletion | Chr1 | 31721515 | 31721523 | 8 | |
| Deletion | Chr1 | 43662192 | 43662193 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 5698794 | 5698798 | 3 | |
| Insertion | Chr8 | 25883556 | 25883559 | 2 | |
| Insertion | Chr12 | 574573 | 574576 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 16809911 | 17549730 | OsKitaake02g176100 |
| Inversion | Chr2 | 17074517 | 17549794 | OsKitaake02g176100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 20462926 | Chr6 | 20294514 | |
| Translocation | Chr8 | 20462931 | Chr6 | 19916105 |