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Mutant Information

Mutant Name	FN3955-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3955-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23539480 A-G Homo INTERGENIC
SBS Chr2 2483776 A-T Hetero INTERGENIC
SBS Chr2 4954706 T-A Hetero INTERGENIC
SBS Chr2 19548051 G-A Hetero INTERGENIC
SBS Chr3 5003999 G-A Homo INTERGENIC
SBS Chr3 5004002 C-A Homo INTERGENIC
SBS Chr3 9990901 T-C Hetero INTERGENIC
SBS Chr3 16415326 A-G Hetero INTERGENIC
SBS Chr3 21220447 G-A Hetero INTERGENIC
SBS Chr3 21255631 T-A Hetero INTERGENIC
SBS Chr3 21255632 G-A Hetero INTERGENIC
SBS Chr3 26210283 C-G Hetero INTERGENIC
SBS Chr4 1724190 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g011400
SBS Chr4 1724191 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g011400
SBS Chr4 6778215 A-G Homo INTERGENIC
SBS Chr4 17041168 C-A Homo INTERGENIC
SBS Chr4 20503927 A-G Hetero INTERGENIC
SBS Chr5 7375066 G-A Hetero INTERGENIC
SBS Chr5 8799613 G-A Homo INTERGENIC
SBS Chr6 17623442 T-A Hetero INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 4943106 G-C Hetero INTERGENIC
SBS Chr7 16564809 A-G Hetero INTERGENIC
SBS Chr7 16762345 G-T Hetero INTERGENIC
SBS Chr7 23048076 A-T Homo INTERGENIC
SBS Chr8 1599618 G-A Homo INTRON
SBS Chr8 15613864 A-G Hetero INTERGENIC
SBS Chr8 22850908 G-A Hetero INTERGENIC
SBS Chr8 23657480 C-T Hetero INTERGENIC
SBS Chr9 8330651 A-C Hetero INTERGENIC
SBS Chr9 9149952 C-T Hetero INTERGENIC
SBS Chr9 11364062 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g070400
SBS Chr9 19795149 T-C Hetero INTRON
SBS Chr10 5947082 C-T Homo INTERGENIC
SBS Chr10 11080975 T-G Homo INTERGENIC
SBS Chr10 11080979 T-C Homo INTERGENIC
SBS Chr11 1777512 T-A Hetero INTERGENIC
SBS Chr12 9611462 G-T Homo INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 441577 441581 4 OsKitaake01g006200
Deletion Chr2 9453283 9453287 4
Deletion Chr3 11362945 11362951 6
Deletion Chr5 12561752 12561754 2
Deletion Chr12 13004448 13004453 5
Deletion Chr7 14471235 14471238 3
Deletion Chr7 15393591 15393593 2
Deletion Chr6 18136899 18136904 5
Deletion Chr7 19288713 19288715 2
Deletion Chr2 20637001 20680000 42999 2
Deletion Chr6 23390495 23390497 2
Deletion Chr8 27680000 27680003 3
Deletion Chr2 32224898 32224899 1 OsKitaake02g329400
Deletion Chr4 35035875 35035883 8 OsKitaake04g294000

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16501963 16501965 1
Insertion Chr10 452192 452195 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1166783 1224953 OsKitaake05g015000
Inversion Chr5 1166785 1224955 OsKitaake05g015000
Inversion Chr1 43925951 44038646 OsKitaake01g491200
Inversion Chr1 43925956 44038663 OsKitaake01g491200

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2249445 Chr2 36841024
Translocation Chr11 24500392 Chr2 20677754 OsKitaake11g197201
Translocation Chr11 24500403 Chr2 20676703 2
Translocation Chr6 25118807 Chr2 26764356
Translocation Chr6 25120048 Chr2 26764352

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23539480	A-G	Homo	INTERGENIC
SBS	Chr2	2483776	A-T	Hetero	INTERGENIC
SBS	Chr2	4954706	T-A	Hetero	INTERGENIC
SBS	Chr2	19548051	G-A	Hetero	INTERGENIC
SBS	Chr3	5003999	G-A	Homo	INTERGENIC
SBS	Chr3	5004002	C-A	Homo	INTERGENIC
SBS	Chr3	9990901	T-C	Hetero	INTERGENIC
SBS	Chr3	16415326	A-G	Hetero	INTERGENIC
SBS	Chr3	21220447	G-A	Hetero	INTERGENIC
SBS	Chr3	21255631	T-A	Hetero	INTERGENIC
SBS	Chr3	21255632	G-A	Hetero	INTERGENIC
SBS	Chr3	26210283	C-G	Hetero	INTERGENIC
SBS	Chr4	1724190	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g011400
SBS	Chr4	1724191	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g011400
SBS	Chr4	6778215	A-G	Homo	INTERGENIC
SBS	Chr4	17041168	C-A	Homo	INTERGENIC
SBS	Chr4	20503927	A-G	Hetero	INTERGENIC
SBS	Chr5	7375066	G-A	Hetero	INTERGENIC
SBS	Chr5	8799613	G-A	Homo	INTERGENIC
SBS	Chr6	17623442	T-A	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	4943106	G-C	Hetero	INTERGENIC
SBS	Chr7	16564809	A-G	Hetero	INTERGENIC
SBS	Chr7	16762345	G-T	Hetero	INTERGENIC
SBS	Chr7	23048076	A-T	Homo	INTERGENIC
SBS	Chr8	1599618	G-A	Homo	INTRON
SBS	Chr8	15613864	A-G	Hetero	INTERGENIC
SBS	Chr8	22850908	G-A	Hetero	INTERGENIC
SBS	Chr8	23657480	C-T	Hetero	INTERGENIC
SBS	Chr9	8330651	A-C	Hetero	INTERGENIC
SBS	Chr9	9149952	C-T	Hetero	INTERGENIC
SBS	Chr9	11364062	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g070400
SBS	Chr9	19795149	T-C	Hetero	INTRON
SBS	Chr10	5947082	C-T	Homo	INTERGENIC
SBS	Chr10	11080975	T-G	Homo	INTERGENIC
SBS	Chr10	11080979	T-C	Homo	INTERGENIC
SBS	Chr11	1777512	T-A	Hetero	INTERGENIC
SBS	Chr12	9611462	G-T	Homo	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	441577	441581	4	OsKitaake01g006200
Deletion	Chr2	9453283	9453287	4
Deletion	Chr3	11362945	11362951	6
Deletion	Chr5	12561752	12561754	2
Deletion	Chr12	13004448	13004453	5
Deletion	Chr7	14471235	14471238	3
Deletion	Chr7	15393591	15393593	2
Deletion	Chr6	18136899	18136904	5
Deletion	Chr7	19288713	19288715	2
Deletion	Chr2	20637001	20680000	42999	2
Deletion	Chr6	23390495	23390497	2
Deletion	Chr8	27680000	27680003	3
Deletion	Chr2	32224898	32224899	1	OsKitaake02g329400
Deletion	Chr4	35035875	35035883	8	OsKitaake04g294000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1166783	1224953	OsKitaake05g015000
Inversion	Chr5	1166785	1224955	OsKitaake05g015000
Inversion	Chr1	43925951	44038646	OsKitaake01g491200
Inversion	Chr1	43925956	44038663	OsKitaake01g491200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes