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| Mutant Information |
|---|
| Mutant Name | FN3957-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3957-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20805139 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2990543 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 9975645 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g136400 |
| SBS | Chr3 | 11629580 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25494811 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g269200 |
| SBS | Chr3 | 25976905 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 21745377 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 32149994 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 444794 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 444800 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 14336750 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 2850061 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4195519 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 6498724 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7670694 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8398846 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 25338800 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 5177427 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 10382650 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 22543587 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2318927 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20099150 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 2186881 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9990945 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23583729 | G-A | Homo | SPLICE_SITE_DONOR | OsKitaake12g189100 |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1735733 | 1735738 | 5 | OsKitaake03g024900 |
| Deletion | Chr8 | 7274001 | 7324000 | 49999 | OsKitaake08g069800 |
| Deletion | Chr11 | 12487231 | 12487240 | 9 | |
| Deletion | Chr2 | 13825345 | 13825655 | 310 | |
| Deletion | Chr12 | 19000202 | 19000210 | 8 | |
| Deletion | Chr12 | 19447073 | 19447097 | 24 | |
| Deletion | Chr3 | 22838143 | 22838145 | 2 | |
| Deletion | Chr6 | 23156533 | 23156550 | 17 | OsKitaake06g203800 |
| Deletion | Chr7 | 23459856 | 23459859 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 16285087 | 16285090 | 2 | |
| Insertion | Chr11 | 26691987 | 26691991 | 3 | |
| Insertion | Chr12 | 11211139 | 11211141 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 16593069 | 16725355 | |
| Inversion | Chr11 | 16593867 | 16725366 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1579905 | Chr5 | 13550415 | OsKitaake08g019800 |
| Translocation | Chr9 | 2896018 | Chr8 | 1579909 | 2 |
| Translocation | Chr5 | 16297895 | Chr4 | 31073865 | 2 |
| Translocation | Chr5 | 16297918 | Chr4 | 31084613 | OsKitaake05g124500 |
| Translocation | Chr4 | 31084629 | Chr1 | 42966732 | |
| Translocation | Chr4 | 31084983 | Chr1 | 42966730 |