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| Mutant Information |
|---|
| Mutant Name | FN3958-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3958-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3994610 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7607079 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g095600 |
| SBS | Chr1 | 18612801 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27135153 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35528555 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 6585027 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21792882 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 28222978 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g291700 |
| SBS | Chr3 | 29576357 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 36946767 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 8246100 | T-C | Homo | INTRON | |
| SBS | Chr4 | 11769120 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 32718477 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 11418613 | A-C | Hetero | INTRON | |
| SBS | Chr6 | 7422637 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g096100 |
| SBS | Chr6 | 9359651 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10889234 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10889235 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30898448 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr8 | 87510 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 4190577 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7680992 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13497450 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 24902538 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 1081885 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10804561 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 21367393 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7478379 | C-T | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 875627 | 875628 | 1 | OsKitaake05g010600 |
| Deletion | Chr11 | 4090001 | 4142000 | 51999 | 5 |
| Deletion | Chr6 | 4387996 | 4388000 | 4 | OsKitaake06g060400 |
| Deletion | Chr9 | 5097001 | 5117000 | 19999 | 2 |
| Deletion | Chr2 | 5534085 | 5534086 | 1 | |
| Deletion | Chr9 | 5763775 | 5763788 | 13 | |
| Deletion | Chr4 | 9556280 | 9556281 | 1 | |
| Deletion | Chr4 | 12969858 | 12969870 | 12 | |
| Deletion | Chr4 | 13464027 | 13464035 | 8 | |
| Deletion | Chr11 | 14105001 | 14122000 | 16999 | OsKitaake11g117800 |
| Deletion | Chr6 | 16455001 | 16487000 | 31999 | 2 |
| Deletion | Chr8 | 17188470 | 17188472 | 2 | |
| Deletion | Chr9 | 19134683 | 19134686 | 3 | |
| Deletion | Chr10 | 20526251 | 20526252 | 1 | |
| Deletion | Chr8 | 22483675 | 22483676 | 1 | |
| Deletion | Chr8 | 29272806 | 29272824 | 18 | |
| Deletion | Chr1 | 32509629 | 32509632 | 3 | |
| Deletion | Chr2 | 33411098 | 33411103 | 5 | |
| Deletion | Chr1 | 42375297 | 42375299 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 9978179 | 10082936 | OsKitaake06g115900 |
| Inversion | Chr6 | 9978934 | 10082947 | OsKitaake06g115900 |