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| Mutant Information |
|---|
| Mutant Name | FN3965-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3965-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5647250 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 20245571 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24652279 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 21549440 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g208500 |
| SBS | Chr2 | 29921532 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g303000 |
| SBS | Chr3 | 4878076 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 18096904 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32863758 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 33462547 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 12515938 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20568254 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 24147840 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 18924593 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 19037345 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28098241 | A-G | Homo | INTRON | |
| SBS | Chr8 | 9023869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12845420 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13876111 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20587522 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20914943 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7451139 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 8464303 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 11796804 | C-G | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 624223 | 624232 | 9 | |
| Deletion | Chr12 | 2402001 | 2438000 | 35999 | 4 |
| Deletion | Chr10 | 2410959 | 2410962 | 3 | |
| Deletion | Chr12 | 2598144 | 2598150 | 6 | |
| Deletion | Chr6 | 3286362 | 3286368 | 6 | |
| Deletion | Chr2 | 6422319 | 6422322 | 3 | |
| Deletion | Chr7 | 10196697 | 10196699 | 2 | |
| Deletion | Chr12 | 10554892 | 10554906 | 14 | |
| Deletion | Chr11 | 12287595 | 12287596 | 1 | |
| Deletion | Chr12 | 16699351 | 16699352 | 1 | |
| Deletion | Chr1 | 16820001 | 17044000 | 223999 | 13 |
| Deletion | Chr5 | 18755197 | 18755222 | 25 | |
| Deletion | Chr7 | 19004991 | 19004998 | 7 | |
| Deletion | Chr9 | 19827664 | 19827665 | 1 | OsKitaake09g164200 |
| Deletion | Chr8 | 22634993 | 22634996 | 3 | |
| Deletion | Chr8 | 22653873 | 22653886 | 13 | |
| Deletion | Chr8 | 24732845 | 24732857 | 12 | |
| Deletion | Chr1 | 30004597 | 30004602 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 24574176 | 24574179 | 2 | |
| Insertion | Chr9 | 7080783 | 7080786 | 2 | |
| Insertion | Chr12 | 4052293 | 4052296 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 22173157 | 22319224 | 2 |