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| Mutant Information |
|---|
| Mutant Name | FN3966-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3966-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32098033 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 34359446 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 10938735 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14152778 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 22226084 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 28317964 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g211000 |
| SBS | Chr5 | 6072995 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14937916 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 21928471 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23279115 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 26731878 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 5768655 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 21130674 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 29827737 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 9368850 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23124090 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 10265950 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 12711485 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 17131216 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 24061370 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4223726 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 10507993 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 13206901 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27026255 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 11758273 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 20564385 | C-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1990001 | 1999000 | 8999 | |
| Deletion | Chr11 | 2442543 | 2442553 | 10 | |
| Deletion | Chr8 | 11535285 | 11535286 | 1 | |
| Deletion | Chr4 | 12218044 | 12218049 | 5 | |
| Deletion | Chr2 | 16612215 | 16612217 | 2 | |
| Deletion | Chr8 | 17108854 | 17108860 | 6 | |
| Deletion | Chr4 | 21793600 | 21793602 | 2 | |
| Deletion | Chr7 | 23118161 | 23118168 | 7 | |
| Deletion | Chr8 | 25937315 | 25937324 | 9 | |
| Deletion | Chr3 | 35828124 | 35828135 | 11 | OsKitaake03g394400 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 26810671 | 26810676 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 21297452 | 21298819 | OsKitaake06g188700 |
| Inversion | Chr6 | 21297454 | 21298827 | OsKitaake06g188700 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 8786115 | Chr3 | 21671224 |