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Mutant Information

Mutant Name	FN3967-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3967-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28433362 T-A Homo INTERGENIC
SBS Chr1 33396065 A-G Homo INTERGENIC
SBS Chr1 34802164 G-A Hetero INTERGENIC
SBS Chr1 38371356 G-A Hetero INTERGENIC
SBS Chr2 13907165 C-A Hetero INTERGENIC
SBS Chr2 30191097 C-T Hetero INTRON
SBS Chr3 1423265 A-G Hetero INTERGENIC
SBS Chr3 13665768 A-C Homo UTR_3_PRIME
SBS Chr3 36569167 G-A Hetero INTERGENIC
SBS Chr4 3900593 T-G Hetero INTERGENIC
SBS Chr4 8063102 T-G Hetero INTERGENIC
SBS Chr4 13782612 G-T Hetero INTERGENIC
SBS Chr4 14622076 T-C Hetero INTRON
SBS Chr4 17350923 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 19994192 T-C Hetero INTERGENIC
SBS Chr6 2188247 C-G Hetero INTERGENIC
SBS Chr7 24587437 G-A Homo INTERGENIC
SBS Chr8 16234294 C-A Homo INTERGENIC
SBS Chr8 18964389 C-G Homo INTERGENIC
SBS Chr8 23805484 T-C Hetero INTERGENIC
SBS Chr9 20225948 A-T Hetero INTERGENIC
SBS Chr9 21832195 G-T Hetero INTERGENIC
SBS Chr10 20073939 C-G Homo INTERGENIC
SBS Chr11 13391837 T-G Hetero INTERGENIC
SBS Chr11 19328666 A-T Hetero UTR_3_PRIME
SBS Chr11 23414490 C-T Hetero INTERGENIC
SBS Chr11 27528513 C-T Hetero INTERGENIC
SBS Chr11 27528514 A-T Hetero INTERGENIC
SBS Chr12 3636266 G-T Homo INTERGENIC
SBS Chr12 12672454 C-T Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 662691 662693 2
Deletion Chr6 964340 964351 11
Deletion Chr9 2464906 2464927 21
Deletion Chr5 2939483 2939487 4
Deletion Chr1 3128973 3128974 1
Deletion Chr11 3498090 3498094 4 OsKitaake11g048400
Deletion Chr7 4281479 4281480 1
Deletion Chr10 4330001 4362000 31999 OsKitaake10g032600
Deletion Chr11 5876939 5876942 3 OsKitaake11g071800
Deletion Chr1 8847537 8847539 2
Deletion Chr5 10308223 10308225 2
Deletion Chr10 10516955 10516956 1
Deletion Chr6 12701578 12701591 13
Deletion Chr1 13684134 13684135 1
Deletion Chr2 16425262 16425283 21
Deletion Chr3 17769867 17769871 4
Deletion Chr5 18668679 18668681 2
Deletion Chr5 19314651 19314663 12
Deletion Chr11 20141810 20141811 1
Deletion Chr7 25430215 25430243 28
Deletion Chr5 27154019 27154039 20
Deletion Chr11 27731497 27731515 18
Deletion Chr3 33490175 33490180 5
Deletion Chr2 36510990 36510992 2
Deletion Chr1 43603001 43684000 80999 16

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23939753 23939756 2
Insertion Chr4 21854946 21854950 3
Insertion Chr10 1809893 1809896 2
Insertion Chr12 12540422 12540425 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14134212 14524043 OsKitaake11g117900
Inversion Chr11 14134218 14524045 OsKitaake11g117900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28433362	T-A	Homo	INTERGENIC
SBS	Chr1	33396065	A-G	Homo	INTERGENIC
SBS	Chr1	34802164	G-A	Hetero	INTERGENIC
SBS	Chr1	38371356	G-A	Hetero	INTERGENIC
SBS	Chr2	13907165	C-A	Hetero	INTERGENIC
SBS	Chr2	30191097	C-T	Hetero	INTRON
SBS	Chr3	1423265	A-G	Hetero	INTERGENIC
SBS	Chr3	13665768	A-C	Homo	UTR_3_PRIME
SBS	Chr3	36569167	G-A	Hetero	INTERGENIC
SBS	Chr4	3900593	T-G	Hetero	INTERGENIC
SBS	Chr4	8063102	T-G	Hetero	INTERGENIC
SBS	Chr4	13782612	G-T	Hetero	INTERGENIC
SBS	Chr4	14622076	T-C	Hetero	INTRON
SBS	Chr4	17350923	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	19994192	T-C	Hetero	INTERGENIC
SBS	Chr6	2188247	C-G	Hetero	INTERGENIC
SBS	Chr7	24587437	G-A	Homo	INTERGENIC
SBS	Chr8	16234294	C-A	Homo	INTERGENIC
SBS	Chr8	18964389	C-G	Homo	INTERGENIC
SBS	Chr8	23805484	T-C	Hetero	INTERGENIC
SBS	Chr9	20225948	A-T	Hetero	INTERGENIC
SBS	Chr9	21832195	G-T	Hetero	INTERGENIC
SBS	Chr10	20073939	C-G	Homo	INTERGENIC
SBS	Chr11	13391837	T-G	Hetero	INTERGENIC
SBS	Chr11	19328666	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	23414490	C-T	Hetero	INTERGENIC
SBS	Chr11	27528513	C-T	Hetero	INTERGENIC
SBS	Chr11	27528514	A-T	Hetero	INTERGENIC
SBS	Chr12	3636266	G-T	Homo	INTERGENIC
SBS	Chr12	12672454	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	662691	662693	2
Deletion	Chr6	964340	964351	11
Deletion	Chr9	2464906	2464927	21
Deletion	Chr5	2939483	2939487	4
Deletion	Chr1	3128973	3128974	1
Deletion	Chr11	3498090	3498094	4	OsKitaake11g048400
Deletion	Chr7	4281479	4281480	1
Deletion	Chr10	4330001	4362000	31999	OsKitaake10g032600
Deletion	Chr11	5876939	5876942	3	OsKitaake11g071800
Deletion	Chr1	8847537	8847539	2
Deletion	Chr5	10308223	10308225	2
Deletion	Chr10	10516955	10516956	1
Deletion	Chr6	12701578	12701591	13
Deletion	Chr1	13684134	13684135	1
Deletion	Chr2	16425262	16425283	21
Deletion	Chr3	17769867	17769871	4
Deletion	Chr5	18668679	18668681	2
Deletion	Chr5	19314651	19314663	12
Deletion	Chr11	20141810	20141811	1
Deletion	Chr7	25430215	25430243	28
Deletion	Chr5	27154019	27154039	20
Deletion	Chr11	27731497	27731515	18
Deletion	Chr3	33490175	33490180	5
Deletion	Chr2	36510990	36510992	2
Deletion	Chr1	43603001	43684000	80999	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14134212	14524043	OsKitaake11g117900
Inversion	Chr11	14134218	14524045	OsKitaake11g117900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes