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Mutant Information

Mutant Name	FN3968-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3968-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14468897 G-C Homo INTERGENIC
SBS Chr1 17531218 G-A Homo INTERGENIC
SBS Chr1 27153838 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 8709496 C-G Hetero INTERGENIC
SBS Chr2 14450783 T-A Hetero INTERGENIC
SBS Chr2 30858689 T-C Hetero INTRON
SBS Chr2 31513330 A-G Hetero INTERGENIC
SBS Chr3 9074135 C-G Homo NON_SYNONYMOUS_CODING OsKitaake03g124500
SBS Chr3 18430306 G-A Hetero INTERGENIC
SBS Chr4 26316674 T-A Homo UTR_3_PRIME
SBS Chr4 36049443 A-T Homo INTERGENIC
SBS Chr5 22568556 T-A Hetero INTERGENIC
SBS Chr6 8916739 T-A Hetero INTERGENIC
SBS Chr6 10142627 C-T Hetero INTERGENIC
SBS Chr7 12069109 G-A Homo INTERGENIC
SBS Chr8 7907632 G-A Homo INTERGENIC
SBS Chr10 8443735 C-T Hetero INTERGENIC
SBS Chr10 10803502 A-T Hetero INTERGENIC
SBS Chr10 10803503 T-G Hetero INTERGENIC
SBS Chr11 13004277 G-A Hetero INTERGENIC
SBS Chr11 17600921 G-A Hetero INTERGENIC
SBS Chr11 17600922 C-A Hetero INTERGENIC
SBS Chr11 21047131 C-G Hetero INTERGENIC
SBS Chr11 21193480 G-A Hetero INTERGENIC
SBS Chr11 22801145 G-C Hetero INTERGENIC
SBS Chr11 26389233 C-T Hetero INTERGENIC
SBS Chr11 27626965 A-G Hetero INTRON
SBS Chr11 29021886 T-C Hetero INTERGENIC
SBS Chr12 9652853 C-T Hetero INTERGENIC
SBS Chr12 10159871 C-T Hetero INTERGENIC
SBS Chr12 18882666 T-G Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1839033 1839042 9
Deletion Chr7 2536532 2536546 14
Deletion Chr9 7014365 7014371 6
Deletion Chr12 11212539 11212548 9
Deletion Chr1 13830001 13910000 79999 OsKitaake01g160400
Deletion Chr1 13912001 13963000 50999 2
Deletion Chr8 14969722 14969723 1
Deletion Chr2 16050413 16050414 1
Deletion Chr6 17401418 17401419 1
Deletion Chr9 21083262 21083264 2
Deletion Chr3 21712721 21712732 11
Deletion Chr8 22027561 22027564 3
Deletion Chr5 22093844 22093849 5
Deletion Chr4 24438290 24438295 5 OsKitaake04g158900
Deletion Chr3 25060214 25060225 11
Deletion Chr11 27994078 27994091 13
Deletion Chr4 29814416 29814419 3
Deletion Chr2 32802351 32802352 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 15797383 15797386 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2987279 3562205
Inversion Chr6 12603181 12723341
Inversion Chr9 17204057 17204480 OsKitaake09g128800
Inversion Chr9 17204087 17204488 OsKitaake09g128800
Inversion Chr1 26318469 27165922
Inversion Chr1 27052550 27165849
Inversion Chr3 28647512 29066373 OsKitaake03g297000
Inversion Chr3 28647515 29066382 OsKitaake03g297000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3562195 Chr10 19149612

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14468897	G-C	Homo	INTERGENIC
SBS	Chr1	17531218	G-A	Homo	INTERGENIC
SBS	Chr1	27153838	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	8709496	C-G	Hetero	INTERGENIC
SBS	Chr2	14450783	T-A	Hetero	INTERGENIC
SBS	Chr2	30858689	T-C	Hetero	INTRON
SBS	Chr2	31513330	A-G	Hetero	INTERGENIC
SBS	Chr3	9074135	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g124500
SBS	Chr3	18430306	G-A	Hetero	INTERGENIC
SBS	Chr4	26316674	T-A	Homo	UTR_3_PRIME
SBS	Chr4	36049443	A-T	Homo	INTERGENIC
SBS	Chr5	22568556	T-A	Hetero	INTERGENIC
SBS	Chr6	8916739	T-A	Hetero	INTERGENIC
SBS	Chr6	10142627	C-T	Hetero	INTERGENIC
SBS	Chr7	12069109	G-A	Homo	INTERGENIC
SBS	Chr8	7907632	G-A	Homo	INTERGENIC
SBS	Chr10	8443735	C-T	Hetero	INTERGENIC
SBS	Chr10	10803502	A-T	Hetero	INTERGENIC
SBS	Chr10	10803503	T-G	Hetero	INTERGENIC
SBS	Chr11	13004277	G-A	Hetero	INTERGENIC
SBS	Chr11	17600921	G-A	Hetero	INTERGENIC
SBS	Chr11	17600922	C-A	Hetero	INTERGENIC
SBS	Chr11	21047131	C-G	Hetero	INTERGENIC
SBS	Chr11	21193480	G-A	Hetero	INTERGENIC
SBS	Chr11	22801145	G-C	Hetero	INTERGENIC
SBS	Chr11	26389233	C-T	Hetero	INTERGENIC
SBS	Chr11	27626965	A-G	Hetero	INTRON
SBS	Chr11	29021886	T-C	Hetero	INTERGENIC
SBS	Chr12	9652853	C-T	Hetero	INTERGENIC
SBS	Chr12	10159871	C-T	Hetero	INTERGENIC
SBS	Chr12	18882666	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1839033	1839042	9
Deletion	Chr7	2536532	2536546	14
Deletion	Chr9	7014365	7014371	6
Deletion	Chr12	11212539	11212548	9
Deletion	Chr1	13830001	13910000	79999	OsKitaake01g160400
Deletion	Chr1	13912001	13963000	50999	2
Deletion	Chr8	14969722	14969723	1
Deletion	Chr2	16050413	16050414	1
Deletion	Chr6	17401418	17401419	1
Deletion	Chr9	21083262	21083264	2
Deletion	Chr3	21712721	21712732	11
Deletion	Chr8	22027561	22027564	3
Deletion	Chr5	22093844	22093849	5
Deletion	Chr4	24438290	24438295	5	OsKitaake04g158900
Deletion	Chr3	25060214	25060225	11
Deletion	Chr11	27994078	27994091	13
Deletion	Chr4	29814416	29814419	3
Deletion	Chr2	32802351	32802352	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2987279	3562205
Inversion	Chr6	12603181	12723341
Inversion	Chr9	17204057	17204480	OsKitaake09g128800
Inversion	Chr9	17204087	17204488	OsKitaake09g128800
Inversion	Chr1	26318469	27165922
Inversion	Chr1	27052550	27165849
Inversion	Chr3	28647512	29066373	OsKitaake03g297000
Inversion	Chr3	28647515	29066382	OsKitaake03g297000

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes