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Mutant Information

Mutant Name	FN3970-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3970-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26981797 G-A Homo INTRON
SBS Chr1 28366847 A-T Homo INTERGENIC
SBS Chr2 33936541 G-A Hetero INTERGENIC
SBS Chr2 33936542 G-A Hetero INTERGENIC
SBS Chr3 3982661 T-C Homo SYNONYMOUS_CODING
SBS Chr3 16308895 G-A Hetero INTERGENIC
SBS Chr3 21907145 G-A Hetero INTERGENIC
SBS Chr3 23105048 A-T Hetero INTERGENIC
SBS Chr3 23105053 G-T Hetero INTERGENIC
SBS Chr3 29626173 A-G Hetero INTERGENIC
SBS Chr3 36160688 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 30856 G-A Hetero INTERGENIC
SBS Chr4 6724163 A-G Hetero INTERGENIC
SBS Chr4 13913286 A-G Hetero INTERGENIC
SBS Chr4 21736300 G-T Hetero INTERGENIC
SBS Chr4 23356727 A-G Hetero INTERGENIC
SBS Chr4 32927089 T-G Hetero INTERGENIC
SBS Chr5 3636821 T-C Hetero INTERGENIC
SBS Chr5 4313440 G-A Hetero INTERGENIC
SBS Chr5 11552840 G-A Hetero INTERGENIC
SBS Chr5 14449642 G-A Hetero INTERGENIC
SBS Chr5 16913414 G-A Hetero INTERGENIC
SBS Chr5 18973108 A-G Homo INTERGENIC
SBS Chr5 29648529 G-A Homo INTRON
SBS Chr6 4191441 A-T Hetero INTRON
SBS Chr6 19267417 A-G Hetero INTERGENIC
SBS Chr6 19909357 C-T Hetero INTERGENIC
SBS Chr7 20259243 C-T Hetero INTRON
SBS Chr8 7184167 A-G Hetero INTERGENIC
SBS Chr8 27946915 G-T Homo UTR_3_PRIME
SBS Chr9 3598337 G-A Hetero INTERGENIC
SBS Chr9 13799745 T-C Hetero INTERGENIC
SBS Chr11 22785138 T-A Hetero INTRON
SBS Chr12 12569430 G-A Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC
SBS Chr12 25131959 G-T Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1432092 1432093 1
Deletion Chr10 5582918 5582922 4
Deletion Chr12 10915370 10915380 10
Deletion Chr12 10975001 11028000 52999 5
Deletion Chr9 18449403 18449412 9
Deletion Chr4 20838522 20838525 3
Deletion Chr11 22784333 22784334 1
Deletion Chr8 25692378 25692382 4
Deletion Chr8 26184913 26184918 5
Deletion Chr6 26372111 26372112 1
Deletion Chr5 28807048 28807049 1
Deletion Chr2 34207820 34207825 5
Deletion Chr1 35749052 35749072 20
Deletion Chr1 39820771 39820779 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22036910 22036913 2
Insertion Chr5 3661025 3661028 2
Insertion Chr5 18486759 18486762 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 10870736 11511907
Inversion Chr12 10942290 11514580 OsKitaake12g101400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10871570 Chr4 293317

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26981797	G-A	Homo	INTRON
SBS	Chr1	28366847	A-T	Homo	INTERGENIC
SBS	Chr2	33936541	G-A	Hetero	INTERGENIC
SBS	Chr2	33936542	G-A	Hetero	INTERGENIC
SBS	Chr3	3982661	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	16308895	G-A	Hetero	INTERGENIC
SBS	Chr3	21907145	G-A	Hetero	INTERGENIC
SBS	Chr3	23105048	A-T	Hetero	INTERGENIC
SBS	Chr3	23105053	G-T	Hetero	INTERGENIC
SBS	Chr3	29626173	A-G	Hetero	INTERGENIC
SBS	Chr3	36160688	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30856	G-A	Hetero	INTERGENIC
SBS	Chr4	6724163	A-G	Hetero	INTERGENIC
SBS	Chr4	13913286	A-G	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Hetero	INTERGENIC
SBS	Chr4	23356727	A-G	Hetero	INTERGENIC
SBS	Chr4	32927089	T-G	Hetero	INTERGENIC
SBS	Chr5	3636821	T-C	Hetero	INTERGENIC
SBS	Chr5	4313440	G-A	Hetero	INTERGENIC
SBS	Chr5	11552840	G-A	Hetero	INTERGENIC
SBS	Chr5	14449642	G-A	Hetero	INTERGENIC
SBS	Chr5	16913414	G-A	Hetero	INTERGENIC
SBS	Chr5	18973108	A-G	Homo	INTERGENIC
SBS	Chr5	29648529	G-A	Homo	INTRON
SBS	Chr6	4191441	A-T	Hetero	INTRON
SBS	Chr6	19267417	A-G	Hetero	INTERGENIC
SBS	Chr6	19909357	C-T	Hetero	INTERGENIC
SBS	Chr7	20259243	C-T	Hetero	INTRON
SBS	Chr8	7184167	A-G	Hetero	INTERGENIC
SBS	Chr8	27946915	G-T	Homo	UTR_3_PRIME
SBS	Chr9	3598337	G-A	Hetero	INTERGENIC
SBS	Chr9	13799745	T-C	Hetero	INTERGENIC
SBS	Chr11	22785138	T-A	Hetero	INTRON
SBS	Chr12	12569430	G-A	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC
SBS	Chr12	25131959	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1432092	1432093	1
Deletion	Chr10	5582918	5582922	4
Deletion	Chr12	10915370	10915380	10
Deletion	Chr12	10975001	11028000	52999	5
Deletion	Chr9	18449403	18449412	9
Deletion	Chr4	20838522	20838525	3
Deletion	Chr11	22784333	22784334	1
Deletion	Chr8	25692378	25692382	4
Deletion	Chr8	26184913	26184918	5
Deletion	Chr6	26372111	26372112	1
Deletion	Chr5	28807048	28807049	1
Deletion	Chr2	34207820	34207825	5
Deletion	Chr1	35749052	35749072	20
Deletion	Chr1	39820771	39820779	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	10870736	11511907
Inversion	Chr12	10942290	11514580	OsKitaake12g101400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes