Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3971-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3971-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1679539 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14061180 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32821944 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 41796447 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 10750639 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 578436 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 14824894 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16511170 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13730648 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 27166233 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27411551 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 3073557 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2171884 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2372491 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6056095 | A-T | Homo | INTRON | |
| SBS | Chr8 | 9830754 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5503504 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 6741915 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 13336123 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 6998715 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 8481449 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 8694925 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19075887 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3984351 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11335364 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 15299290 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19270828 | A-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 8755001 | 8784000 | 28999 | 2 |
| Deletion | Chr7 | 11984659 | 11984660 | 1 | |
| Deletion | Chr2 | 22102001 | 22114000 | 11999 | OsKitaake02g214900 |
| Deletion | Chr2 | 35361276 | 35361286 | 10 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 29598358 | 29598362 | 3 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 10403851 | 10627675 | |
| Inversion | Chr6 | 10403867 | 10627673 | |
| Inversion | Chr12 | 22309574 | 22691363 | |
| Inversion | Chr12 | 22309592 | 22691363 | |
| Inversion | Chr3 | 25427972 | 25446481 | |
| Inversion | Chr3 | 25437011 | 25446484 | OsKitaake03g268400 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 6996837 | Chr3 | 25437006 | 2 |
| Translocation | Chr10 | 6996862 | Chr3 | 25432665 | OsKitaake10g046600 |