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| Mutant Information |
|---|
| Mutant Name | FN3974-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3974-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1479173 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 9671811 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 14212504 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 34294685 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 18540023 | T-G | Homo | INTERGENIC | |
| SBS | Chr2 | 31961147 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21986508 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32323957 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19870943 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 33213070 | G-C | Hetero | INTRON | |
| SBS | Chr5 | 11212870 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20058166 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16126071 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 19103376 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 12683077 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 16821160 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 1570069 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 13022288 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23108097 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g177200 |
| SBS | Chr8 | 24887463 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 29051000 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g251900 |
| SBS | Chr9 | 21792001 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12905837 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23670640 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 14994038 | G-A | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 5550423 | 5550428 | 5 | |
| Deletion | Chr11 | 9533928 | 9533940 | 12 | |
| Deletion | Chr6 | 9800885 | 9800891 | 6 | OsKitaake06g114400 |
| Deletion | Chr4 | 12376062 | 12376065 | 3 | |
| Deletion | Chr6 | 15894906 | 15894937 | 31 | |
| Deletion | Chr2 | 18601895 | 18601921 | 26 | |
| Deletion | Chr10 | 22151838 | 22151843 | 5 | |
| Deletion | Chr8 | 22412625 | 22412634 | 9 | OsKitaake08g170900 |
| Deletion | Chr8 | 26115165 | 26115167 | 2 | |
| Deletion | Chr8 | 26766140 | 26766150 | 10 | |
| Deletion | Chr5 | 27767776 | 27767783 | 7 | |
| Deletion | Chr4 | 28700739 | 28700743 | 4 | |
| Deletion | Chr2 | 36449200 | 36449201 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 14930509 | 14930512 | 2 | |
| Insertion | Chr10 | 20152961 | 20152968 | 6 | |
| Insertion | Chr12 | 24348074 | 24348077 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 19397170 | 19419424 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 9412498 | Chr6 | 19396926 | |
| Translocation | Chr11 | 9414624 | Chr6 | 19419414 | OsKitaake11g098500 |