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Mutant Information

Mutant Name	FN3976-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3976-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15976931 G-A Hetero INTERGENIC
SBS Chr1 31235089 G-A Hetero INTERGENIC
SBS Chr1 40035699 T-A Hetero INTERGENIC
SBS Chr1 42326044 C-T Hetero INTERGENIC
SBS Chr2 197326 T-A Homo INTERGENIC
SBS Chr2 11733352 A-G Hetero INTERGENIC
SBS Chr2 12477823 T-C Hetero INTERGENIC
SBS Chr2 14352550 T-C Hetero INTERGENIC
SBS Chr2 22942158 G-A Hetero INTERGENIC
SBS Chr2 32768424 C-A Homo INTERGENIC
SBS Chr2 32768425 A-G Homo INTERGENIC
SBS Chr3 17201503 G-T Hetero UTR_3_PRIME
SBS Chr3 18215679 T-C Hetero INTERGENIC
SBS Chr3 21164418 G-A Hetero INTRON
SBS Chr3 35420433 T-C Hetero INTERGENIC
SBS Chr4 11005374 G-A Homo INTERGENIC
SBS Chr4 14565645 G-A Homo INTERGENIC
SBS Chr4 34809256 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g291200
SBS Chr4 34809257 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 34809258 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g291200
SBS Chr4 35726103 A-G Hetero INTERGENIC
SBS Chr5 26169678 T-A Hetero INTERGENIC
SBS Chr6 917084 G-A Hetero INTERGENIC
SBS Chr6 12776461 A-T Homo INTERGENIC
SBS Chr6 14962885 C-T Homo INTERGENIC
SBS Chr6 24934171 C-A Hetero INTERGENIC
SBS Chr7 6776652 T-C Homo INTERGENIC
SBS Chr7 11958800 T-A Hetero INTERGENIC
SBS Chr7 15666666 G-T Hetero INTERGENIC
SBS Chr7 17392987 G-A Hetero INTERGENIC
SBS Chr7 27177057 T-C Homo INTERGENIC
SBS Chr8 186929 T-A Hetero INTRON
SBS Chr8 866608 C-T Hetero INTERGENIC
SBS Chr8 11051530 T-A Hetero INTERGENIC
SBS Chr8 14116527 C-T Hetero INTERGENIC
SBS Chr8 22329829 C-A Hetero UTR_5_PRIME
SBS Chr8 23617367 T-C Hetero INTERGENIC
SBS Chr9 11233441 G-A Hetero INTERGENIC
SBS Chr9 14064555 G-A Hetero INTERGENIC
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr11 9973567 A-C Hetero INTERGENIC
SBS Chr11 13327606 A-G Hetero INTERGENIC
SBS Chr11 14164468 T-C Hetero INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 12364531 12364533 2
Deletion Chr4 13415315 13415319 4
Deletion Chr2 14048639 14048643 4
Deletion Chr2 16264927 16264941 14
Deletion Chr5 19024320 19024332 12
Deletion Chr12 23113437 23113443 6
Deletion Chr3 23995838 23995851 13
Deletion Chr7 25170410 25170411 1
Deletion Chr7 27530394 27530396 2
Deletion Chr1 42102001 42114000 11999 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2999700 2999703 2
Insertion Chr6 1100237 1100240 2
Insertion Chr6 6119391 6119394 2
Insertion Chr6 6786146 6786149 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 14547456 14864120
Inversion Chr8 14549590 14864127 OsKitaake08g114200
Inversion Chr1 42050429 42102086 OsKitaake01g462300
Inversion Chr1 42050441 42113497 OsKitaake01g462500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15976931	G-A	Hetero	INTERGENIC
SBS	Chr1	31235089	G-A	Hetero	INTERGENIC
SBS	Chr1	40035699	T-A	Hetero	INTERGENIC
SBS	Chr1	42326044	C-T	Hetero	INTERGENIC
SBS	Chr2	197326	T-A	Homo	INTERGENIC
SBS	Chr2	11733352	A-G	Hetero	INTERGENIC
SBS	Chr2	12477823	T-C	Hetero	INTERGENIC
SBS	Chr2	14352550	T-C	Hetero	INTERGENIC
SBS	Chr2	22942158	G-A	Hetero	INTERGENIC
SBS	Chr2	32768424	C-A	Homo	INTERGENIC
SBS	Chr2	32768425	A-G	Homo	INTERGENIC
SBS	Chr3	17201503	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	18215679	T-C	Hetero	INTERGENIC
SBS	Chr3	21164418	G-A	Hetero	INTRON
SBS	Chr3	35420433	T-C	Hetero	INTERGENIC
SBS	Chr4	11005374	G-A	Homo	INTERGENIC
SBS	Chr4	14565645	G-A	Homo	INTERGENIC
SBS	Chr4	34809256	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g291200
SBS	Chr4	34809257	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	34809258	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g291200
SBS	Chr4	35726103	A-G	Hetero	INTERGENIC
SBS	Chr5	26169678	T-A	Hetero	INTERGENIC
SBS	Chr6	917084	G-A	Hetero	INTERGENIC
SBS	Chr6	12776461	A-T	Homo	INTERGENIC
SBS	Chr6	14962885	C-T	Homo	INTERGENIC
SBS	Chr6	24934171	C-A	Hetero	INTERGENIC
SBS	Chr7	6776652	T-C	Homo	INTERGENIC
SBS	Chr7	11958800	T-A	Hetero	INTERGENIC
SBS	Chr7	15666666	G-T	Hetero	INTERGENIC
SBS	Chr7	17392987	G-A	Hetero	INTERGENIC
SBS	Chr7	27177057	T-C	Homo	INTERGENIC
SBS	Chr8	186929	T-A	Hetero	INTRON
SBS	Chr8	866608	C-T	Hetero	INTERGENIC
SBS	Chr8	11051530	T-A	Hetero	INTERGENIC
SBS	Chr8	14116527	C-T	Hetero	INTERGENIC
SBS	Chr8	22329829	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	23617367	T-C	Hetero	INTERGENIC
SBS	Chr9	11233441	G-A	Hetero	INTERGENIC
SBS	Chr9	14064555	G-A	Hetero	INTERGENIC
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr11	9973567	A-C	Hetero	INTERGENIC
SBS	Chr11	13327606	A-G	Hetero	INTERGENIC
SBS	Chr11	14164468	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	12364531	12364533	2
Deletion	Chr4	13415315	13415319	4
Deletion	Chr2	14048639	14048643	4
Deletion	Chr2	16264927	16264941	14
Deletion	Chr5	19024320	19024332	12
Deletion	Chr12	23113437	23113443	6
Deletion	Chr3	23995838	23995851	13
Deletion	Chr7	25170410	25170411	1
Deletion	Chr7	27530394	27530396	2
Deletion	Chr1	42102001	42114000	11999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	14547456	14864120
Inversion	Chr8	14549590	14864127	OsKitaake08g114200
Inversion	Chr1	42050429	42102086	OsKitaake01g462300
Inversion	Chr1	42050441	42113497	OsKitaake01g462500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes