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| Mutant Information |
|---|
| Mutant Name | FN3978-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3978-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27140369 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31180136 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32760048 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33190930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34214385 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 34247157 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 40428845 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 28704840 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 5321176 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18358102 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31349449 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34685811 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34989539 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 3526512 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8593499 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11944139 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 17626572 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 6116276 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 17557117 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 17557118 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 9382984 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20794764 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 25481336 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 2308701 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2327611 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9385705 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19235556 | A-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 690110 | 690119 | 9 | |
| Deletion | Chr10 | 1352005 | 1352006 | 1 | |
| Deletion | Chr7 | 6820111 | 6820128 | 17 | |
| Deletion | Chr3 | 9552279 | 9552281 | 2 | |
| Deletion | Chr4 | 15536409 | 15536419 | 10 | |
| Deletion | Chr6 | 21271616 | 21271617 | 1 | OsKitaake06g188500 |
| Deletion | Chr9 | 21569350 | 21569355 | 5 | OsKitaake09g189100 |
| Deletion | Chr10 | 24035284 | 24035292 | 8 | |
| Deletion | Chr5 | 27131670 | 27131675 | 5 | |
| Deletion | Chr2 | 29590354 | 29590355 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 29884145 | 29884148 | 2 | |
| Insertion | Chr7 | 16444729 | 16444732 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 3657137 | Chr1 | 39483017 | OsKitaake01g425900 |
| Translocation | Chr8 | 3657188 | Chr1 | 39498240 |