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Mutant Information

Mutant Name	FN3980-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3980-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9871606 G-A Hetero INTERGENIC
SBS Chr1 12214909 C-T Hetero INTERGENIC
SBS Chr1 13655162 T-C Homo INTERGENIC
SBS Chr1 39505401 A-C Hetero INTERGENIC
SBS Chr2 1272561 C-A Hetero INTERGENIC
SBS Chr3 30112986 A-G Homo INTERGENIC
SBS Chr4 19007931 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g095400
SBS Chr4 19007938 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g095400
SBS Chr4 27002336 G-T Hetero INTERGENIC
SBS Chr5 1181586 T-G Hetero INTERGENIC
SBS Chr6 498745 A-T Homo INTERGENIC
SBS Chr6 7628645 T-A Hetero INTERGENIC
SBS Chr6 26346582 G-A Hetero INTRON
SBS Chr7 5203372 T-C Hetero INTERGENIC
SBS Chr9 4478532 G-A Hetero INTERGENIC
SBS Chr10 6754352 G-A Hetero INTERGENIC
SBS Chr10 12650355 A-C Hetero INTERGENIC
SBS Chr10 13414053 C-T Hetero INTERGENIC
SBS Chr11 2412799 T-A Homo INTERGENIC
SBS Chr11 9091424 T-C Hetero INTERGENIC
SBS Chr11 14336987 T-A Hetero INTERGENIC
SBS Chr11 16350621 C-A Hetero INTERGENIC
SBS Chr11 17414663 G-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 995001 1053000 57999 12
Deletion Chr4 1249001 1287000 37999 2
Deletion Chr4 3258001 3307000 48999 2
Deletion Chr5 6319158 6319160 2
Deletion Chr1 13594846 13594862 16
Deletion Chr4 17468153 17468155 2
Deletion Chr10 17771463 17771464 1
Deletion Chr10 18023079 18023080 1
Deletion Chr4 18858736 18858738 2
Deletion Chr11 27155001 27201000 45999 4
Deletion Chr3 32907631 32907638 7
Deletion Chr1 33849728 33849731 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 2640050 2640053 2
Insertion Chr2 14395467 14395472 4
Insertion Chr3 19362193 19362195 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 14087262 14105230

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 8675477 Chr2 14105224
Translocation Chr7 8705706 Chr2 14087246

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9871606	G-A	Hetero	INTERGENIC
SBS	Chr1	12214909	C-T	Hetero	INTERGENIC
SBS	Chr1	13655162	T-C	Homo	INTERGENIC
SBS	Chr1	39505401	A-C	Hetero	INTERGENIC
SBS	Chr2	1272561	C-A	Hetero	INTERGENIC
SBS	Chr3	30112986	A-G	Homo	INTERGENIC
SBS	Chr4	19007931	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g095400
SBS	Chr4	19007938	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g095400
SBS	Chr4	27002336	G-T	Hetero	INTERGENIC
SBS	Chr5	1181586	T-G	Hetero	INTERGENIC
SBS	Chr6	498745	A-T	Homo	INTERGENIC
SBS	Chr6	7628645	T-A	Hetero	INTERGENIC
SBS	Chr6	26346582	G-A	Hetero	INTRON
SBS	Chr7	5203372	T-C	Hetero	INTERGENIC
SBS	Chr9	4478532	G-A	Hetero	INTERGENIC
SBS	Chr10	6754352	G-A	Hetero	INTERGENIC
SBS	Chr10	12650355	A-C	Hetero	INTERGENIC
SBS	Chr10	13414053	C-T	Hetero	INTERGENIC
SBS	Chr11	2412799	T-A	Homo	INTERGENIC
SBS	Chr11	9091424	T-C	Hetero	INTERGENIC
SBS	Chr11	14336987	T-A	Hetero	INTERGENIC
SBS	Chr11	16350621	C-A	Hetero	INTERGENIC
SBS	Chr11	17414663	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	995001	1053000	57999	12
Deletion	Chr4	1249001	1287000	37999	2
Deletion	Chr4	3258001	3307000	48999	2
Deletion	Chr5	6319158	6319160	2
Deletion	Chr1	13594846	13594862	16
Deletion	Chr4	17468153	17468155	2
Deletion	Chr10	17771463	17771464	1
Deletion	Chr10	18023079	18023080	1
Deletion	Chr4	18858736	18858738	2
Deletion	Chr11	27155001	27201000	45999	4
Deletion	Chr3	32907631	32907638	7
Deletion	Chr1	33849728	33849731	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14087262	14105230

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes