Search Kitaake

Mutant Information

Mutant Name	FN3981-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3981-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5570777 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g071500
SBS Chr1 10668873 C-G Hetero INTRON
SBS Chr2 18264375 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g181400
SBS Chr2 19984567 T-A Hetero INTERGENIC
SBS Chr2 21091277 G-A Hetero INTERGENIC
SBS Chr3 16938756 A-G Homo INTERGENIC
SBS Chr3 33563640 T-G Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr4 5824709 T-C Hetero INTERGENIC
SBS Chr4 9422263 C-T Hetero INTERGENIC
SBS Chr4 13960469 A-G Hetero INTERGENIC
SBS Chr4 16451497 G-T Hetero INTERGENIC
SBS Chr4 17244822 C-A Hetero INTERGENIC
SBS Chr4 24632277 C-T Hetero INTERGENIC
SBS Chr4 27608714 T-C Homo INTERGENIC
SBS Chr5 4164001 T-C Hetero INTERGENIC
SBS Chr5 27988698 C-T Hetero UTR_3_PRIME
SBS Chr6 533684 C-T Homo INTRON
SBS Chr6 7109392 G-A Homo INTERGENIC
SBS Chr7 15007658 C-A Homo INTERGENIC
SBS Chr7 15007659 T-A Homo INTERGENIC
SBS Chr8 16610181 G-A Hetero INTERGENIC
SBS Chr8 17487123 T-G Hetero INTRON
SBS Chr8 19753286 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 20514965 T-C Homo INTERGENIC
SBS Chr8 24292012 A-T Homo INTERGENIC
SBS Chr8 25007631 G-T Hetero INTERGENIC
SBS Chr9 5718741 C-T Homo INTERGENIC
SBS Chr9 8088866 C-G Hetero INTERGENIC
SBS Chr10 16044234 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g106400
SBS Chr11 2334442 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g033800
SBS Chr11 9470529 A-T Homo UTR_3_PRIME
SBS Chr11 9470530 A-T Homo UTR_3_PRIME
SBS Chr11 15279494 G-C Homo INTERGENIC
SBS Chr12 2567796 A-T Hetero INTERGENIC
SBS Chr12 4593843 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g060800
SBS Chr12 11057727 T-G Homo INTERGENIC
SBS Chr12 24657912 A-C Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1181384 1181385 1
Deletion Chr2 2053001 2071000 17999 OsKitaake02g031200
Deletion Chr12 6520992 6521000 8
Deletion Chr12 8134098 8134100 2
Deletion Chr12 12840312 12840315 3
Deletion Chr3 13577033 13577041 8
Deletion Chr1 14630001 14646000 15999
Deletion Chr3 19143871 19143877 6
Deletion Chr11 19201619 19201625 6
Deletion Chr6 19885683 19885689 6
Deletion Chr9 20723645 20723646 1
Deletion Chr5 22186835 22186836 1
Deletion Chr6 23171217 23171218 1
Deletion Chr2 28015001 28065000 49999 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 19936835 19936838 2
Insertion Chr12 23333501 23333506 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3573329 3632289
Inversion Chr8 27783853 28076955

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3573340 Chr2 2052328
Translocation Chr12 21856115 Chr8 250980
Translocation Chr8 27783848 Chr3 28856540 OsKitaake03g299100
Translocation Chr8 28076951 Chr3 28826432

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5570777	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g071500
SBS	Chr1	10668873	C-G	Hetero	INTRON
SBS	Chr2	18264375	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g181400
SBS	Chr2	19984567	T-A	Hetero	INTERGENIC
SBS	Chr2	21091277	G-A	Hetero	INTERGENIC
SBS	Chr3	16938756	A-G	Homo	INTERGENIC
SBS	Chr3	33563640	T-G	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr4	5824709	T-C	Hetero	INTERGENIC
SBS	Chr4	9422263	C-T	Hetero	INTERGENIC
SBS	Chr4	13960469	A-G	Hetero	INTERGENIC
SBS	Chr4	16451497	G-T	Hetero	INTERGENIC
SBS	Chr4	17244822	C-A	Hetero	INTERGENIC
SBS	Chr4	24632277	C-T	Hetero	INTERGENIC
SBS	Chr4	27608714	T-C	Homo	INTERGENIC
SBS	Chr5	4164001	T-C	Hetero	INTERGENIC
SBS	Chr5	27988698	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	533684	C-T	Homo	INTRON
SBS	Chr6	7109392	G-A	Homo	INTERGENIC
SBS	Chr7	15007658	C-A	Homo	INTERGENIC
SBS	Chr7	15007659	T-A	Homo	INTERGENIC
SBS	Chr8	16610181	G-A	Hetero	INTERGENIC
SBS	Chr8	17487123	T-G	Hetero	INTRON
SBS	Chr8	19753286	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	20514965	T-C	Homo	INTERGENIC
SBS	Chr8	24292012	A-T	Homo	INTERGENIC
SBS	Chr8	25007631	G-T	Hetero	INTERGENIC
SBS	Chr9	5718741	C-T	Homo	INTERGENIC
SBS	Chr9	8088866	C-G	Hetero	INTERGENIC
SBS	Chr10	16044234	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g106400
SBS	Chr11	2334442	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g033800
SBS	Chr11	9470529	A-T	Homo	UTR_3_PRIME
SBS	Chr11	9470530	A-T	Homo	UTR_3_PRIME
SBS	Chr11	15279494	G-C	Homo	INTERGENIC
SBS	Chr12	2567796	A-T	Hetero	INTERGENIC
SBS	Chr12	4593843	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g060800
SBS	Chr12	11057727	T-G	Homo	INTERGENIC
SBS	Chr12	24657912	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1181384	1181385	1
Deletion	Chr2	2053001	2071000	17999	OsKitaake02g031200
Deletion	Chr12	6520992	6521000	8
Deletion	Chr12	8134098	8134100	2
Deletion	Chr12	12840312	12840315	3
Deletion	Chr3	13577033	13577041	8
Deletion	Chr1	14630001	14646000	15999
Deletion	Chr3	19143871	19143877	6
Deletion	Chr11	19201619	19201625	6
Deletion	Chr6	19885683	19885689	6
Deletion	Chr9	20723645	20723646	1
Deletion	Chr5	22186835	22186836	1
Deletion	Chr6	23171217	23171218	1
Deletion	Chr2	28015001	28065000	49999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3573329	3632289
Inversion	Chr8	27783853	28076955

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes