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| Mutant Information |
|---|
| Mutant Name | FN3982-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3982-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7742461 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35016413 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 19094798 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 3413119 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 13823330 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 37213335 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1499616 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 16992029 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26678736 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g192600 |
| SBS | Chr5 | 736673 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g008900 |
| SBS | Chr6 | 23015310 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 23649643 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 26597471 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 9511847 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 17537059 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 19800633 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23371982 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27136437 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 29285855 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4850490 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 10305932 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 11708665 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 14614461 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 7461293 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13346134 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 5484607 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 13506179 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 14656977 | A-G | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 847337 | 847338 | 1 | |
| Deletion | Chr2 | 1659685 | 1659689 | 4 | |
| Deletion | Chr3 | 2543216 | 2543224 | 8 | OsKitaake03g035800 |
| Deletion | Chr8 | 2795413 | 2795426 | 13 | |
| Deletion | Chr8 | 3328280 | 3328298 | 18 | |
| Deletion | Chr1 | 4390993 | 4391001 | 8 | |
| Deletion | Chr2 | 6382838 | 6382839 | 1 | |
| Deletion | Chr1 | 10840197 | 10840198 | 1 | |
| Deletion | Chr5 | 10890103 | 10890104 | 1 | |
| Deletion | Chr1 | 14250699 | 14250700 | 1 | |
| Deletion | Chr2 | 14284765 | 14284768 | 3 | |
| Deletion | Chr8 | 16516068 | 16516077 | 9 | |
| Deletion | Chr1 | 18894203 | 18894207 | 4 | |
| Deletion | Chr12 | 19091487 | 19091489 | 2 | |
| Deletion | Chr5 | 20083137 | 20083140 | 3 | |
| Deletion | Chr2 | 20307301 | 20307302 | 1 | OsKitaake02g197900 |
| Deletion | Chr1 | 20682183 | 20682187 | 4 | |
| Deletion | Chr1 | 21948577 | 21948580 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 19734775 | 19734778 | 2 | |
| Insertion | Chr10 | 11505560 | 11505562 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 5905740 | 6211779 | OsKitaake07g071700 |
| Inversion | Chr7 | 5905744 | 6211780 | OsKitaake07g071700 |
| Inversion | Chr8 | 15703496 | 15945660 | OsKitaake08g121300 |
| Inversion | Chr8 | 15703504 | 15945666 | OsKitaake08g121300 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 4365498 | Chr4 | 16454015 | OsKitaake05g050500 |
| Translocation | Chr5 | 4365846 | Chr4 | 16454022 | OsKitaake05g050500 |
| Translocation | Chr12 | 5168820 | Chr4 | 26111575 | OsKitaake12g065400 |
| Translocation | Chr10 | 13534705 | Chr1 | 25629349 | |
| Translocation | Chr10 | 13535444 | Chr1 | 25629348 | |
| Translocation | Chr12 | 25398634 | Chr9 | 13532956 | 2 |