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Mutant Information

Mutant Name	FN3983-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3983-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3023722 G-A Hetero INTERGENIC
SBS Chr1 14712597 T-A Homo INTRON
SBS Chr1 34281439 T-A Homo INTERGENIC
SBS Chr2 5572430 A-T Homo INTERGENIC
SBS Chr2 35201440 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g368700
SBS Chr3 21455095 C-A Hetero UTR_3_PRIME
SBS Chr4 24129879 C-T Hetero INTERGENIC
SBS Chr4 24422720 C-T Homo INTERGENIC
SBS Chr4 25102418 G-A Homo INTERGENIC
SBS Chr4 34019897 C-A Hetero INTRON
SBS Chr5 8907454 A-G Hetero INTERGENIC
SBS Chr5 13418741 C-G Hetero INTERGENIC
SBS Chr5 23855267 A-G Hetero INTRON
SBS Chr5 27727738 G-C Hetero SYNONYMOUS_CODING
SBS Chr6 4323218 A-G Hetero INTERGENIC
SBS Chr6 9891437 T-C Hetero INTERGENIC
SBS Chr6 16528117 G-A Hetero INTERGENIC
SBS Chr6 23376086 T-A Homo INTERGENIC
SBS Chr7 11771359 G-A Homo INTERGENIC
SBS Chr7 11771361 T-A Homo INTERGENIC
SBS Chr8 17307508 T-C Hetero INTERGENIC
SBS Chr8 17435683 G-A Homo INTERGENIC
SBS Chr9 18183102 A-T Hetero INTERGENIC
SBS Chr10 22616359 G-A Homo INTERGENIC
SBS Chr11 415586 G-C Hetero INTERGENIC
SBS Chr11 14818520 G-A Hetero INTERGENIC
SBS Chr11 25344559 C-T Homo INTRON
SBS Chr12 5393534 C-G Hetero INTERGENIC
SBS Chr12 6817845 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g077300
SBS Chr12 17666851 C-A Homo INTERGENIC
SBS Chr12 20315870 A-G Homo NON_SYNONYMOUS_CODING OsKitaake12g157700
SBS Chr12 26753865 G-T Homo INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1955515 1955530 15
Deletion Chr5 10605087 10605089 2
Deletion Chr1 14116652 14116657 5
Deletion Chr1 14610747 14610778 31
Deletion Chr9 20978861 20978863 2
Deletion Chr12 21815001 21840000 24999 2
Deletion Chr7 21954032 21954034 2
Deletion Chr6 22068551 22068552 1
Deletion Chr4 23750313 23750324 11
Deletion Chr12 27023519 27023840 321

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 176980 176987 6
Insertion Chr10 17704870 17704873 2
Insertion Chr11 18305333 18305338 4
Insertion Chr3 4089589 4089591 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 21380039 21663145
Inversion Chr9 21380066 21663153
Inversion Chr3 26713709 26888853
Inversion Chr3 26713713 26888859

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9904345 Chr4 26111475 OsKitaake06g114800
Translocation Chr6 9904350 Chr4 26110014 OsKitaake06g114800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3023722	G-A	Hetero	INTERGENIC
SBS	Chr1	14712597	T-A	Homo	INTRON
SBS	Chr1	34281439	T-A	Homo	INTERGENIC
SBS	Chr2	5572430	A-T	Homo	INTERGENIC
SBS	Chr2	35201440	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g368700
SBS	Chr3	21455095	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	24129879	C-T	Hetero	INTERGENIC
SBS	Chr4	24422720	C-T	Homo	INTERGENIC
SBS	Chr4	25102418	G-A	Homo	INTERGENIC
SBS	Chr4	34019897	C-A	Hetero	INTRON
SBS	Chr5	8907454	A-G	Hetero	INTERGENIC
SBS	Chr5	13418741	C-G	Hetero	INTERGENIC
SBS	Chr5	23855267	A-G	Hetero	INTRON
SBS	Chr5	27727738	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	4323218	A-G	Hetero	INTERGENIC
SBS	Chr6	9891437	T-C	Hetero	INTERGENIC
SBS	Chr6	16528117	G-A	Hetero	INTERGENIC
SBS	Chr6	23376086	T-A	Homo	INTERGENIC
SBS	Chr7	11771359	G-A	Homo	INTERGENIC
SBS	Chr7	11771361	T-A	Homo	INTERGENIC
SBS	Chr8	17307508	T-C	Hetero	INTERGENIC
SBS	Chr8	17435683	G-A	Homo	INTERGENIC
SBS	Chr9	18183102	A-T	Hetero	INTERGENIC
SBS	Chr10	22616359	G-A	Homo	INTERGENIC
SBS	Chr11	415586	G-C	Hetero	INTERGENIC
SBS	Chr11	14818520	G-A	Hetero	INTERGENIC
SBS	Chr11	25344559	C-T	Homo	INTRON
SBS	Chr12	5393534	C-G	Hetero	INTERGENIC
SBS	Chr12	6817845	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g077300
SBS	Chr12	17666851	C-A	Homo	INTERGENIC
SBS	Chr12	20315870	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g157700
SBS	Chr12	26753865	G-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1955515	1955530	15
Deletion	Chr5	10605087	10605089	2
Deletion	Chr1	14116652	14116657	5
Deletion	Chr1	14610747	14610778	31
Deletion	Chr9	20978861	20978863	2
Deletion	Chr12	21815001	21840000	24999	2
Deletion	Chr7	21954032	21954034	2
Deletion	Chr6	22068551	22068552	1
Deletion	Chr4	23750313	23750324	11
Deletion	Chr12	27023519	27023840	321

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21380039	21663145
Inversion	Chr9	21380066	21663153
Inversion	Chr3	26713709	26888853
Inversion	Chr3	26713713	26888859

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes