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Mutant Information

Mutant Name	FN3985-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3985-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26161256 C-A Homo INTERGENIC
SBS Chr2 23179734 G-T Hetero INTERGENIC
SBS Chr3 15179650 C-T Hetero INTERGENIC
SBS Chr3 24120984 G-A Hetero INTERGENIC
SBS Chr3 34377068 A-T Homo INTERGENIC
SBS Chr4 4713176 G-A Hetero INTERGENIC
SBS Chr4 8146349 C-T Homo INTERGENIC
SBS Chr4 17593244 A-T Hetero INTERGENIC
SBS Chr4 23832420 C-T Homo INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 7549572 A-G Homo INTERGENIC
SBS Chr6 7767168 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 17968909 C-T Hetero INTERGENIC
SBS Chr7 9982700 G-A Hetero INTERGENIC
SBS Chr7 17910048 C-G Hetero INTERGENIC
SBS Chr7 29586471 C-T Hetero INTERGENIC
SBS Chr8 14913247 G-A Hetero INTRON
SBS Chr8 15340917 C-A Hetero INTRON
SBS Chr9 49795 G-A Hetero INTERGENIC
SBS Chr9 15596076 G-T Hetero INTERGENIC
SBS Chr11 526285 T-A Hetero INTERGENIC
SBS Chr11 14579854 G-T Hetero INTERGENIC
SBS Chr11 14579855 A-G Hetero INTERGENIC
SBS Chr11 17870231 A-G Hetero INTRON
SBS Chr12 2854519 C-A Hetero INTERGENIC
SBS Chr12 25879160 G-T Homo INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1959347 1959358 11
Deletion Chr5 4076227 4076233 6
Deletion Chr1 4212853 4212855 2
Deletion Chr2 5724456 5724470 14
Deletion Chr3 6196789 6196791 2
Deletion Chr3 6897001 6921000 23999 OsKitaake03g097600
Deletion Chr12 8223287 8223292 5
Deletion Chr1 8610492 8610494 2
Deletion Chr1 11011916 11011917 1
Deletion Chr10 11265938 11265958 20
Deletion Chr10 12834913 12834915 2
Deletion Chr10 15480983 15480993 10
Deletion Chr6 18122893 18122906 13
Deletion Chr3 18676469 18676470 1
Deletion Chr4 19208903 19208905 2
Deletion Chr6 19392655 19392656 1
Deletion Chr4 20595524 20595525 1
Deletion Chr5 21372889 21372906 17
Deletion Chr12 21949969 21949980 11
Deletion Chr2 23500972 23500987 15
Deletion Chr3 24469170 24469178 8
Deletion Chr8 24918504 24918506 2
Deletion Chr11 25067659 25067661 2
Deletion Chr11 26077563 26077564 1
Deletion Chr7 26643345 26643346 1 OsKitaake07g247400
Deletion Chr1 26696959 26696960 1
Deletion Chr1 27250560 27250579 19
Deletion Chr8 27458164 27458170 6
Deletion Chr11 27955262 27955263 1
Deletion Chr4 36629959 36629962 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18173234 18173237 2
Insertion Chr4 33142928 33142932 3
Insertion Chr6 3314139 3314142 2
Insertion Chr11 3341945 3341948 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26161256	C-A	Homo	INTERGENIC
SBS	Chr2	23179734	G-T	Hetero	INTERGENIC
SBS	Chr3	15179650	C-T	Hetero	INTERGENIC
SBS	Chr3	24120984	G-A	Hetero	INTERGENIC
SBS	Chr3	34377068	A-T	Homo	INTERGENIC
SBS	Chr4	4713176	G-A	Hetero	INTERGENIC
SBS	Chr4	8146349	C-T	Homo	INTERGENIC
SBS	Chr4	17593244	A-T	Hetero	INTERGENIC
SBS	Chr4	23832420	C-T	Homo	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	7549572	A-G	Homo	INTERGENIC
SBS	Chr6	7767168	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	17968909	C-T	Hetero	INTERGENIC
SBS	Chr7	9982700	G-A	Hetero	INTERGENIC
SBS	Chr7	17910048	C-G	Hetero	INTERGENIC
SBS	Chr7	29586471	C-T	Hetero	INTERGENIC
SBS	Chr8	14913247	G-A	Hetero	INTRON
SBS	Chr8	15340917	C-A	Hetero	INTRON
SBS	Chr9	49795	G-A	Hetero	INTERGENIC
SBS	Chr9	15596076	G-T	Hetero	INTERGENIC
SBS	Chr11	526285	T-A	Hetero	INTERGENIC
SBS	Chr11	14579854	G-T	Hetero	INTERGENIC
SBS	Chr11	14579855	A-G	Hetero	INTERGENIC
SBS	Chr11	17870231	A-G	Hetero	INTRON
SBS	Chr12	2854519	C-A	Hetero	INTERGENIC
SBS	Chr12	25879160	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1959347	1959358	11
Deletion	Chr5	4076227	4076233	6
Deletion	Chr1	4212853	4212855	2
Deletion	Chr2	5724456	5724470	14
Deletion	Chr3	6196789	6196791	2
Deletion	Chr3	6897001	6921000	23999	OsKitaake03g097600
Deletion	Chr12	8223287	8223292	5
Deletion	Chr1	8610492	8610494	2
Deletion	Chr1	11011916	11011917	1
Deletion	Chr10	11265938	11265958	20
Deletion	Chr10	12834913	12834915	2
Deletion	Chr10	15480983	15480993	10
Deletion	Chr6	18122893	18122906	13
Deletion	Chr3	18676469	18676470	1
Deletion	Chr4	19208903	19208905	2
Deletion	Chr6	19392655	19392656	1
Deletion	Chr4	20595524	20595525	1
Deletion	Chr5	21372889	21372906	17
Deletion	Chr12	21949969	21949980	11
Deletion	Chr2	23500972	23500987	15
Deletion	Chr3	24469170	24469178	8
Deletion	Chr8	24918504	24918506	2
Deletion	Chr11	25067659	25067661	2
Deletion	Chr11	26077563	26077564	1
Deletion	Chr7	26643345	26643346	1	OsKitaake07g247400
Deletion	Chr1	26696959	26696960	1
Deletion	Chr1	27250560	27250579	19
Deletion	Chr8	27458164	27458170	6
Deletion	Chr11	27955262	27955263	1
Deletion	Chr4	36629959	36629962	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes