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| Mutant Information |
|---|
| Mutant Name | FN3987-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3987-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2029043 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 2473614 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 8677176 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17145913 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 28332157 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29989214 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17222077 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 10436498 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23245904 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35151301 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 10058697 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 10351607 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 13193045 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 13318178 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26120555 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 11599909 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 13223301 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 17093206 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6644216 | A-T | Hetero | SPLICE_SITE_DONOR | OsKitaake07g076300 |
| SBS | Chr7 | 26130775 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 3418526 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 18969110 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 22665433 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 24439821 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7706267 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 5662205 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14369563 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 11187419 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 21156108 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26760026 | G-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2482492 | 2482495 | 3 | |
| Deletion | Chr6 | 4642256 | 4642259 | 3 | |
| Deletion | Chr8 | 5067262 | 5067264 | 2 | |
| Deletion | Chr12 | 5265652 | 5265656 | 4 | |
| Deletion | Chr12 | 10662284 | 10662286 | 2 | |
| Deletion | Chr1 | 10850780 | 10850787 | 7 | |
| Deletion | Chr7 | 11010598 | 11010600 | 2 | |
| Deletion | Chr2 | 18447111 | 18447117 | 6 | |
| Deletion | Chr3 | 19787279 | 19787294 | 15 | |
| Deletion | Chr5 | 20063335 | 20063339 | 4 | |
| Deletion | Chr8 | 23559808 | 23559821 | 13 | |
| Deletion | Chr3 | 24243100 | 24243103 | 3 | |
| Deletion | Chr5 | 28732268 | 28732284 | 16 | |
| Deletion | Chr3 | 28755001 | 28774000 | 18999 | 3 |
| Deletion | Chr6 | 29563167 | 29563176 | 9 | |
| Deletion | Chr2 | 33709403 | 33709404 | 1 | OsKitaake02g348600 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 29494065 | 29494068 | 2 | |
| Insertion | Chr5 | 8242212 | 8242214 | 1 |