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Mutant Information

Mutant Name	FN399-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN399-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5917019 T-A Hetero INTERGENIC
SBS Chr1 7982685 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g099900
SBS Chr1 17453109 C-T Homo INTERGENIC
SBS Chr1 31377542 C-T Homo INTERGENIC
SBS Chr2 1008923 T-C Hetero INTERGENIC
SBS Chr2 4876000 A-G Homo INTERGENIC
SBS Chr2 24714097 T-G Hetero INTERGENIC
SBS Chr2 26685423 C-T Hetero INTERGENIC
SBS Chr2 30212550 G-A Hetero INTERGENIC
SBS Chr3 15846585 C-G Hetero INTRON
SBS Chr4 7298990 G-A Homo INTERGENIC
SBS Chr4 27639428 G-A Hetero INTRON
SBS Chr5 3391966 C-T Hetero INTERGENIC
SBS Chr5 4735834 T-C Homo INTERGENIC
SBS Chr5 5303035 G-A Homo INTERGENIC
SBS Chr5 14416120 C-G Hetero INTERGENIC
SBS Chr6 3089211 A-G Hetero INTERGENIC
SBS Chr6 9390010 G-A Hetero INTERGENIC
SBS Chr6 15660264 G-A Hetero INTRON
SBS Chr6 17115700 C-A Hetero INTERGENIC
SBS Chr6 27771362 G-A Hetero INTRON
SBS Chr7 15040318 T-C Hetero INTERGENIC
SBS Chr7 19740043 G-T Hetero INTERGENIC
SBS Chr7 20481609 G-C Hetero INTERGENIC
SBS Chr8 14451428 G-T Hetero INTERGENIC
SBS Chr8 23627937 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g181700
SBS Chr9 5355358 G-T Hetero INTERGENIC
SBS Chr9 9249282 C-T Hetero INTERGENIC
SBS Chr10 5240323 T-C Hetero INTERGENIC
SBS Chr10 13498565 G-C Hetero INTRON
SBS Chr10 13498567 A-T Hetero INTRON
SBS Chr10 14909025 C-A Hetero INTERGENIC
SBS Chr11 4560682 G-A Hetero INTRON
SBS Chr11 12330703 C-T Homo INTERGENIC
SBS Chr11 19253277 C-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3828515 3828516 1
Deletion Chr11 12716872 12716881 9
Deletion Chr2 12846510 12846531 21
Deletion Chr2 21732657 21732658 1
Deletion Chr5 28803681 28803682 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31371435 31371438 2
Insertion Chr5 15202181 15202184 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 19260403 19536546 OsKitaake09g159500
Inversion Chr9 19260408 19536557 OsKitaake09g159500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 6473102 Chr1 31233095 OsKitaake01g312500
Translocation Chr7 6473115 Chr1 31233387 OsKitaake01g312500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5917019	T-A	Hetero	INTERGENIC
SBS	Chr1	7982685	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g099900
SBS	Chr1	17453109	C-T	Homo	INTERGENIC
SBS	Chr1	31377542	C-T	Homo	INTERGENIC
SBS	Chr2	1008923	T-C	Hetero	INTERGENIC
SBS	Chr2	4876000	A-G	Homo	INTERGENIC
SBS	Chr2	24714097	T-G	Hetero	INTERGENIC
SBS	Chr2	26685423	C-T	Hetero	INTERGENIC
SBS	Chr2	30212550	G-A	Hetero	INTERGENIC
SBS	Chr3	15846585	C-G	Hetero	INTRON
SBS	Chr4	7298990	G-A	Homo	INTERGENIC
SBS	Chr4	27639428	G-A	Hetero	INTRON
SBS	Chr5	3391966	C-T	Hetero	INTERGENIC
SBS	Chr5	4735834	T-C	Homo	INTERGENIC
SBS	Chr5	5303035	G-A	Homo	INTERGENIC
SBS	Chr5	14416120	C-G	Hetero	INTERGENIC
SBS	Chr6	3089211	A-G	Hetero	INTERGENIC
SBS	Chr6	9390010	G-A	Hetero	INTERGENIC
SBS	Chr6	15660264	G-A	Hetero	INTRON
SBS	Chr6	17115700	C-A	Hetero	INTERGENIC
SBS	Chr6	27771362	G-A	Hetero	INTRON
SBS	Chr7	15040318	T-C	Hetero	INTERGENIC
SBS	Chr7	19740043	G-T	Hetero	INTERGENIC
SBS	Chr7	20481609	G-C	Hetero	INTERGENIC
SBS	Chr8	14451428	G-T	Hetero	INTERGENIC
SBS	Chr8	23627937	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g181700
SBS	Chr9	5355358	G-T	Hetero	INTERGENIC
SBS	Chr9	9249282	C-T	Hetero	INTERGENIC
SBS	Chr10	5240323	T-C	Hetero	INTERGENIC
SBS	Chr10	13498565	G-C	Hetero	INTRON
SBS	Chr10	13498567	A-T	Hetero	INTRON
SBS	Chr10	14909025	C-A	Hetero	INTERGENIC
SBS	Chr11	4560682	G-A	Hetero	INTRON
SBS	Chr11	12330703	C-T	Homo	INTERGENIC
SBS	Chr11	19253277	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3828515	3828516	1
Deletion	Chr11	12716872	12716881	9
Deletion	Chr2	12846510	12846531	21
Deletion	Chr2	21732657	21732658	1
Deletion	Chr5	28803681	28803682	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	19260403	19536546	OsKitaake09g159500
Inversion	Chr9	19260408	19536557	OsKitaake09g159500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes