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Mutant Information

Mutant Name	FN3990-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3990-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6420379 G-C Homo INTERGENIC
SBS Chr1 29836087 G-A Hetero INTERGENIC
SBS Chr1 42268342 T-C Hetero INTERGENIC
SBS Chr2 13723474 C-T Hetero INTERGENIC
SBS Chr2 18330576 G-C Hetero INTERGENIC
SBS Chr2 20714006 G-A Hetero INTERGENIC
SBS Chr2 25173809 C-T Hetero INTERGENIC
SBS Chr2 25650869 G-C Hetero INTERGENIC
SBS Chr2 25713666 G-C Hetero INTERGENIC
SBS Chr2 30956450 G-T Hetero INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 5291407 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g074950
SBS Chr3 31605566 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g333000
SBS Chr4 6856789 C-T Hetero INTERGENIC
SBS Chr4 24378634 A-G Hetero INTERGENIC
SBS Chr5 15709756 C-T Homo INTERGENIC
SBS Chr5 20072926 C-T Hetero INTERGENIC
SBS Chr5 20544529 C-T Homo INTERGENIC
SBS Chr6 4538434 G-A Homo INTERGENIC
SBS Chr6 4538436 C-T Homo INTERGENIC
SBS Chr6 9868320 C-T Homo INTERGENIC
SBS Chr6 17078255 A-T Homo INTERGENIC
SBS Chr6 24830283 C-G Homo INTERGENIC
SBS Chr7 27813389 G-A Homo INTERGENIC
SBS Chr8 560404 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g008200
SBS Chr8 14376794 A-G Hetero INTRON
SBS Chr8 18022334 A-T Hetero INTERGENIC
SBS Chr8 25271379 A-G Hetero INTERGENIC
SBS Chr9 2227182 G-A Hetero INTERGENIC
SBS Chr10 15272289 C-A Hetero INTERGENIC
SBS Chr10 22490225 A-G Hetero UTR_3_PRIME
SBS Chr11 19618259 C-T Hetero INTERGENIC
SBS Chr11 23053639 G-A Hetero INTERGENIC
SBS Chr12 22699383 C-T Homo INTRON

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1609836 1609837 1
Deletion Chr3 3793883 3793887 4
Deletion Chr2 4330963 4330970 7
Deletion Chr1 5387792 5387801 9
Deletion Chr3 6104896 6104902 6
Deletion Chr1 6441357 6441369 12
Deletion Chr10 8086001 8141000 54999 3
Deletion Chr1 8324957 8324958 1
Deletion Chr1 8327001 8352000 24999 3
Deletion Chr6 9404337 9404343 6
Deletion Chr2 10875037 10875045 8
Deletion Chr2 11172985 11172986 1
Deletion Chr2 11710122 11710132 10
Deletion Chr8 15578768 15578770 2
Deletion Chr11 16275320 16275321 1
Deletion Chr8 17465429 17465432 3 OsKitaake08g131000
Deletion Chr9 19115213 19115215 2
Deletion Chr7 19255846 19255857 11
Deletion Chr6 24002956 24002957 1 OsKitaake06g212900
Deletion Chr7 25286523 25286524 1
Deletion Chr4 26587297 26587301 4
Deletion Chr11 27028219 27028220 1
Deletion Chr6 27225321 27225322 1 OsKitaake06g245200
Deletion Chr2 30854782 30854793 11
Deletion Chr1 37859424 37859430 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18319570 18319573 2
Insertion Chr4 19004830 19004833 2
Insertion Chr7 11514403 11514405 1
Insertion Chr11 17135318 17135320 1 OsKitaake11g133750

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 22894959 23201453 3

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 22894959 Chr1 6235670 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6420379	G-C	Homo	INTERGENIC
SBS	Chr1	29836087	G-A	Hetero	INTERGENIC
SBS	Chr1	42268342	T-C	Hetero	INTERGENIC
SBS	Chr2	13723474	C-T	Hetero	INTERGENIC
SBS	Chr2	18330576	G-C	Hetero	INTERGENIC
SBS	Chr2	20714006	G-A	Hetero	INTERGENIC
SBS	Chr2	25173809	C-T	Hetero	INTERGENIC
SBS	Chr2	25650869	G-C	Hetero	INTERGENIC
SBS	Chr2	25713666	G-C	Hetero	INTERGENIC
SBS	Chr2	30956450	G-T	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	5291407	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g074950
SBS	Chr3	31605566	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g333000
SBS	Chr4	6856789	C-T	Hetero	INTERGENIC
SBS	Chr4	24378634	A-G	Hetero	INTERGENIC
SBS	Chr5	15709756	C-T	Homo	INTERGENIC
SBS	Chr5	20072926	C-T	Hetero	INTERGENIC
SBS	Chr5	20544529	C-T	Homo	INTERGENIC
SBS	Chr6	4538434	G-A	Homo	INTERGENIC
SBS	Chr6	4538436	C-T	Homo	INTERGENIC
SBS	Chr6	9868320	C-T	Homo	INTERGENIC
SBS	Chr6	17078255	A-T	Homo	INTERGENIC
SBS	Chr6	24830283	C-G	Homo	INTERGENIC
SBS	Chr7	27813389	G-A	Homo	INTERGENIC
SBS	Chr8	560404	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g008200
SBS	Chr8	14376794	A-G	Hetero	INTRON
SBS	Chr8	18022334	A-T	Hetero	INTERGENIC
SBS	Chr8	25271379	A-G	Hetero	INTERGENIC
SBS	Chr9	2227182	G-A	Hetero	INTERGENIC
SBS	Chr10	15272289	C-A	Hetero	INTERGENIC
SBS	Chr10	22490225	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	19618259	C-T	Hetero	INTERGENIC
SBS	Chr11	23053639	G-A	Hetero	INTERGENIC
SBS	Chr12	22699383	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1609836	1609837	1
Deletion	Chr3	3793883	3793887	4
Deletion	Chr2	4330963	4330970	7
Deletion	Chr1	5387792	5387801	9
Deletion	Chr3	6104896	6104902	6
Deletion	Chr1	6441357	6441369	12
Deletion	Chr10	8086001	8141000	54999	3
Deletion	Chr1	8324957	8324958	1
Deletion	Chr1	8327001	8352000	24999	3
Deletion	Chr6	9404337	9404343	6
Deletion	Chr2	10875037	10875045	8
Deletion	Chr2	11172985	11172986	1
Deletion	Chr2	11710122	11710132	10
Deletion	Chr8	15578768	15578770	2
Deletion	Chr11	16275320	16275321	1
Deletion	Chr8	17465429	17465432	3	OsKitaake08g131000
Deletion	Chr9	19115213	19115215	2
Deletion	Chr7	19255846	19255857	11
Deletion	Chr6	24002956	24002957	1	OsKitaake06g212900
Deletion	Chr7	25286523	25286524	1
Deletion	Chr4	26587297	26587301	4
Deletion	Chr11	27028219	27028220	1
Deletion	Chr6	27225321	27225322	1	OsKitaake06g245200
Deletion	Chr2	30854782	30854793	11
Deletion	Chr1	37859424	37859430	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	22894959	23201453	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes