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Mutant Information

Mutant Name	FN3991-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3991-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 750481 G-A Hetero INTERGENIC
SBS Chr1 23971993 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g230500
SBS Chr1 30850500 G-A Hetero INTRON
SBS Chr1 32592137 G-T Hetero INTERGENIC
SBS Chr1 40377339 A-G Homo INTERGENIC
SBS Chr2 8842422 C-A Homo INTERGENIC
SBS Chr2 22364375 A-G Hetero INTERGENIC
SBS Chr2 32682414 A-T Hetero INTERGENIC
SBS Chr2 32682415 A-T Hetero INTERGENIC
SBS Chr2 36958223 C-G Homo INTERGENIC
SBS Chr3 4768530 C-T Homo INTERGENIC
SBS Chr3 11454725 T-C Hetero INTERGENIC
SBS Chr3 23620125 T-A Hetero INTERGENIC
SBS Chr3 34500212 T-C Homo INTRON
SBS Chr4 812284 A-G Hetero UTR_3_PRIME
SBS Chr4 5506210 T-A Hetero INTERGENIC
SBS Chr5 151592 T-C Hetero INTERGENIC
SBS Chr6 12642718 G-A Hetero INTERGENIC
SBS Chr6 17448115 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g162300
SBS Chr7 17722439 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g143900
SBS Chr7 17722440 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g143900
SBS Chr8 4413045 G-A Homo INTERGENIC
SBS Chr9 1113043 C-A Hetero INTERGENIC
SBS Chr9 9414474 C-T Hetero INTERGENIC
SBS Chr9 9414478 A-G Hetero INTERGENIC
SBS Chr9 16767264 G-T Hetero INTRON
SBS Chr10 2592006 T-A Hetero INTERGENIC
SBS Chr10 5914008 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 6437995 G-A Hetero INTERGENIC
SBS Chr10 20377179 C-A Homo INTERGENIC
SBS Chr11 3647703 C-G Hetero INTERGENIC
SBS Chr11 6967193 G-A Hetero INTERGENIC
SBS Chr11 12735830 C-T Hetero INTERGENIC
SBS Chr11 24605735 T-A Homo INTERGENIC
SBS Chr12 27071270 G-T Homo SYNONYMOUS_CODING

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2421862 2421864 2
Deletion Chr7 2711412 2711416 4 OsKitaake07g035200
Deletion Chr5 3735098 3735100 2
Deletion Chr6 11432996 11433005 9 OsKitaake06g126400
Deletion Chr2 13839618 13839620 2
Deletion Chr3 14256001 14268000 11999 OsKitaake03g186100
Deletion Chr5 18521001 18572000 50999 9
Deletion Chr5 18630001 18664000 33999 OsKitaake05g145700
Deletion Chr9 18959338 18959343 5
Deletion Chr2 21405516 21405519 3
Deletion Chr2 22354493 22354499 6
Deletion Chr3 28020515 28020519 4
Deletion Chr4 30319031 30319052 21
Deletion Chr3 32977797 32977818 21

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37937731 37937734 2
Insertion Chr3 7297663 7297666 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 17250965 17340831 2
Inversion Chr7 17250967 17340832 2
Inversion Chr2 22802956 23038383 OsKitaake02g221800
Inversion Chr2 22802959 23038385 OsKitaake02g221800
Inversion Chr2 25546938 25917112
Inversion Chr2 25546952 25917114

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	750481	G-A	Hetero	INTERGENIC
SBS	Chr1	23971993	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g230500
SBS	Chr1	30850500	G-A	Hetero	INTRON
SBS	Chr1	32592137	G-T	Hetero	INTERGENIC
SBS	Chr1	40377339	A-G	Homo	INTERGENIC
SBS	Chr2	8842422	C-A	Homo	INTERGENIC
SBS	Chr2	22364375	A-G	Hetero	INTERGENIC
SBS	Chr2	32682414	A-T	Hetero	INTERGENIC
SBS	Chr2	32682415	A-T	Hetero	INTERGENIC
SBS	Chr2	36958223	C-G	Homo	INTERGENIC
SBS	Chr3	4768530	C-T	Homo	INTERGENIC
SBS	Chr3	11454725	T-C	Hetero	INTERGENIC
SBS	Chr3	23620125	T-A	Hetero	INTERGENIC
SBS	Chr3	34500212	T-C	Homo	INTRON
SBS	Chr4	812284	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	5506210	T-A	Hetero	INTERGENIC
SBS	Chr5	151592	T-C	Hetero	INTERGENIC
SBS	Chr6	12642718	G-A	Hetero	INTERGENIC
SBS	Chr6	17448115	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g162300
SBS	Chr7	17722439	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g143900
SBS	Chr7	17722440	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g143900
SBS	Chr8	4413045	G-A	Homo	INTERGENIC
SBS	Chr9	1113043	C-A	Hetero	INTERGENIC
SBS	Chr9	9414474	C-T	Hetero	INTERGENIC
SBS	Chr9	9414478	A-G	Hetero	INTERGENIC
SBS	Chr9	16767264	G-T	Hetero	INTRON
SBS	Chr10	2592006	T-A	Hetero	INTERGENIC
SBS	Chr10	5914008	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6437995	G-A	Hetero	INTERGENIC
SBS	Chr10	20377179	C-A	Homo	INTERGENIC
SBS	Chr11	3647703	C-G	Hetero	INTERGENIC
SBS	Chr11	6967193	G-A	Hetero	INTERGENIC
SBS	Chr11	12735830	C-T	Hetero	INTERGENIC
SBS	Chr11	24605735	T-A	Homo	INTERGENIC
SBS	Chr12	27071270	G-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2421862	2421864	2
Deletion	Chr7	2711412	2711416	4	OsKitaake07g035200
Deletion	Chr5	3735098	3735100	2
Deletion	Chr6	11432996	11433005	9	OsKitaake06g126400
Deletion	Chr2	13839618	13839620	2
Deletion	Chr3	14256001	14268000	11999	OsKitaake03g186100
Deletion	Chr5	18521001	18572000	50999	9
Deletion	Chr5	18630001	18664000	33999	OsKitaake05g145700
Deletion	Chr9	18959338	18959343	5
Deletion	Chr2	21405516	21405519	3
Deletion	Chr2	22354493	22354499	6
Deletion	Chr3	28020515	28020519	4
Deletion	Chr4	30319031	30319052	21
Deletion	Chr3	32977797	32977818	21

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17250965	17340831	2
Inversion	Chr7	17250967	17340832	2
Inversion	Chr2	22802956	23038383	OsKitaake02g221800
Inversion	Chr2	22802959	23038385	OsKitaake02g221800
Inversion	Chr2	25546938	25917112
Inversion	Chr2	25546952	25917114

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes