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| Mutant Information |
|---|
| Mutant Name | FN3992-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3992-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 42
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12901982 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 22592994 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27330236 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g265900 |
| SBS | Chr1 | 27352190 | C-G | Hetero | INTRON | |
| SBS | Chr1 | 34045984 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34524736 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 35286360 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 68328 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 206957 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1321229 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7531865 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7649827 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 26942178 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13034210 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 15114450 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32147983 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34076993 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 36906648 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1315361 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6970220 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17289613 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23447699 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 67421 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 17243864 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17932326 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g139000 |
| SBS | Chr6 | 8183357 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18705895 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8245894 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 28522236 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 9849537 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 22145648 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 15790721 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g112700 |
| SBS | Chr10 | 11038088 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11737204 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11737210 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11927835 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 13285886 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 17241812 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1184609 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8733282 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 14042135 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 26418968 | G-T | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3294627 | 3294628 | 1 | OsKitaake02g048000 |
| Deletion | Chr3 | 11568016 | 11568020 | 4 | |
| Deletion | Chr5 | 17495066 | 17495070 | 4 | |
| Deletion | Chr8 | 23196785 | 23196787 | 2 | |
| Deletion | Chr8 | 26587001 | 26820000 | 232999 | 31 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 17732339 | 17732342 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 6580097 | 6944260 | |
| Inversion | Chr4 | 6580099 | 6944260 | |
| Inversion | Chr11 | 15377783 | 15379846 | |
| Inversion | Chr7 | 28263445 | 28507754 | OsKitaake07g267200 |
| Inversion | Chr7 | 28265603 | 28507760 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 701742 | Chr7 | 28263463 | 2 |
| Translocation | Chr12 | 701746 | Chr7 | 28265600 | OsKitaake12g009600 |