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| Mutant Information |
|---|
| Mutant Name | FN3993-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3993-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8269982 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 11918814 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13086322 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g155200 |
| SBS | Chr1 | 15179418 | A-T | Homo | INTRON | |
| SBS | Chr1 | 28629928 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34969660 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 26568555 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 32739658 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18060346 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 8587054 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21755990 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21755991 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29301171 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4939019 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20368110 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g182000 |
| SBS | Chr6 | 24828103 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30182574 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 12411368 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g110600 |
| SBS | Chr7 | 16359170 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10854902 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 18021282 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18846768 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g139700 |
| SBS | Chr8 | 20154557 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11538265 | A-T | Homo | INTRON | |
| SBS | Chr11 | 14715523 | G-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 4186187 | 4186189 | 2 | |
| Deletion | Chr2 | 4481614 | 4481615 | 1 | |
| Deletion | Chr12 | 8203329 | 8203340 | 11 | |
| Deletion | Chr6 | 10679766 | 10679771 | 5 | OsKitaake06g119600 |
| Deletion | Chr12 | 11395023 | 11395033 | 10 | |
| Deletion | Chr12 | 11430751 | 11430754 | 3 | |
| Deletion | Chr5 | 12707812 | 12707814 | 2 | |
| Deletion | Chr4 | 13064985 | 13065000 | 15 | |
| Deletion | Chr9 | 19586001 | 19595000 | 8999 | OsKitaake09g160200 |
| Deletion | Chr10 | 19744376 | 19744386 | 10 | |
| Deletion | Chr1 | 27761506 | 27761512 | 6 | |
| Deletion | Chr1 | 40588573 | 40588576 | 3 | OsKitaake01g440800 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 19594996 | 19819825 | OsKitaake09g164100 |
| Inversion | Chr9 | 19953385 | 20313621 | |
| Inversion | Chr9 | 19953485 | 20313675 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6614920 | Chr8 | 24934846 | |
| Translocation | Chr9 | 19586128 | Chr1 | 32635127 | OsKitaake09g160200 |
| Translocation | Chr9 | 19819810 | Chr1 | 32635865 | OsKitaake09g164100 |
| Translocation | Chr9 | 20313675 | Chr1 | 1378490 | OsKitaake01g016500 |