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| Mutant Information |
|---|
| Mutant Name | FN3994-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3994-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16652443 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 17695849 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24935853 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 27945045 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37160057 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 2566951 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 30076758 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31305442 | C-T | Homo | INTRON | |
| SBS | Chr6 | 8090207 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17596704 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 24171466 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24916151 | T-C | Homo | INTRON | |
| SBS | Chr6 | 24916154 | G-A | Homo | INTRON | |
| SBS | Chr7 | 8476191 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 10359125 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 15034510 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 22644655 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 25667308 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28476997 | C-T | Homo | INTRON | |
| SBS | Chr9 | 1321497 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3907507 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1607622 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2458479 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 20479278 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 8006817 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10601606 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 19079634 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21717394 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25246957 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21229081 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g166900 |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2966243 | 2966246 | 3 | |
| Deletion | Chr10 | 3124124 | 3124135 | 11 | |
| Deletion | Chr8 | 9196080 | 9196083 | 3 | |
| Deletion | Chr7 | 9431513 | 9431519 | 6 | |
| Deletion | Chr10 | 11270188 | 11270192 | 4 | |
| Deletion | Chr9 | 14703241 | 14703242 | 1 | |
| Deletion | Chr6 | 14801759 | 14801766 | 7 | |
| Deletion | Chr6 | 20204336 | 20204384 | 48 | |
| Deletion | Chr8 | 22837196 | 22837197 | 1 | |
| Deletion | Chr10 | 23855740 | 23855746 | 6 | OsKitaake10g205200 |
| Deletion | Chr2 | 25705514 | 25705516 | 2 | |
| Deletion | Chr7 | 26609123 | 26609132 | 9 | |
| Deletion | Chr7 | 27622461 | 27622482 | 21 | |
| Deletion | Chr1 | 27807891 | 27807894 | 3 | |
| Deletion | Chr4 | 35787505 | 35787506 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 10174913 | 10174915 | 1 | |
| Insertion | Chr5 | 14569030 | 14569033 | 2 | |
| Insertion | Chr8 | 10713819 | 10713826 | 6 | |
| Insertion | Chr5 | 30240668 | 30240670 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 24400786 | 25055035 | |
| Inversion | Chr3 | 24400828 | 25055043 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 2842352 | Chr2 | 15565950 | |
| Translocation | Chr7 | 8140191 | Chr4 | 32857706 | OsKitaake04g265600 |
| Translocation | Chr8 | 13289018 | Chr5 | 10903182 | |
| Translocation | Chr8 | 13289032 | Chr5 | 10052436 |