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Mutant Information

Mutant Name	FN3997-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3997-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12396058 A-G Hetero INTERGENIC
SBS Chr1 17510082 T-C Hetero INTERGENIC
SBS Chr1 35161030 C-T Hetero UTR_3_PRIME
SBS Chr1 36284014 T-A Hetero INTERGENIC
SBS Chr2 1425311 C-A Hetero UTR_5_PRIME
SBS Chr2 35788732 A-T Hetero INTERGENIC
SBS Chr2 36442780 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g386400
SBS Chr3 2536211 G-A Hetero INTRON
SBS Chr3 2775243 T-C Hetero INTRON
SBS Chr3 8657944 C-T Hetero UTR_3_PRIME
SBS Chr3 30040070 A-G Homo INTERGENIC
SBS Chr3 34809503 T-A Hetero INTERGENIC
SBS Chr3 36501946 G-A Homo INTRON
SBS Chr4 2129422 G-A Hetero INTERGENIC
SBS Chr4 2904598 G-A Hetero INTERGENIC
SBS Chr4 7964998 G-A Homo INTERGENIC
SBS Chr4 22352718 G-A Homo INTERGENIC
SBS Chr4 26486842 G-A Homo INTRON
SBS Chr5 3535343 C-T Hetero INTERGENIC
SBS Chr5 12995886 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g101000
SBS Chr6 16493305 C-T Hetero INTERGENIC
SBS Chr6 17963955 C-T Hetero INTERGENIC
SBS Chr6 22675103 A-T Homo INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr7 20929759 C-T Hetero INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr9 4661275 G-C Hetero INTERGENIC
SBS Chr10 12941568 G-A Homo INTERGENIC
SBS Chr10 18672268 G-A Hetero INTERGENIC
SBS Chr10 21068635 A-G Homo INTRON
SBS Chr12 9533720 G-A Homo INTERGENIC
SBS Chr12 11874120 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1794656 1794659 3 OsKitaake01g021300
Deletion Chr8 6612001 6646000 33999
Deletion Chr4 14196079 14196099 20 OsKitaake04g068000
Deletion Chr7 16159125 16159127 2
Deletion Chr6 17626574 17626579 5
Deletion Chr8 17700503 17700504 1
Deletion Chr5 18647001 18764000 116999 4
Deletion Chr5 18776001 18783000 6999 2
Deletion Chr5 18784001 18904000 119999 14
Deletion Chr4 20660265 20660268 3
Deletion Chr7 23344661 23344662 1
Deletion Chr1 25311001 25329000 17999 OsKitaake01g245201
Deletion Chr7 27226388 27226389 1
Deletion Chr3 30226114 30226118 4
Deletion Chr6 30450395 30450402 7
Deletion Chr3 36621704 36621706 2
Deletion Chr1 37176469 37176473 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9643192 9643196 3

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 3760711 Chr1 6633701 2
Translocation Chr5 3760720 Chr1 6634848 2
Translocation Chr8 6071948 Chr1 8284706 OsKitaake08g065300
Translocation Chr8 6071970 Chr1 8246728 OsKitaake08g065300
Translocation Chr5 7414930 Chr1 5577229 OsKitaake05g074200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12396058	A-G	Hetero	INTERGENIC
SBS	Chr1	17510082	T-C	Hetero	INTERGENIC
SBS	Chr1	35161030	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	36284014	T-A	Hetero	INTERGENIC
SBS	Chr2	1425311	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	35788732	A-T	Hetero	INTERGENIC
SBS	Chr2	36442780	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g386400
SBS	Chr3	2536211	G-A	Hetero	INTRON
SBS	Chr3	2775243	T-C	Hetero	INTRON
SBS	Chr3	8657944	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	30040070	A-G	Homo	INTERGENIC
SBS	Chr3	34809503	T-A	Hetero	INTERGENIC
SBS	Chr3	36501946	G-A	Homo	INTRON
SBS	Chr4	2129422	G-A	Hetero	INTERGENIC
SBS	Chr4	2904598	G-A	Hetero	INTERGENIC
SBS	Chr4	7964998	G-A	Homo	INTERGENIC
SBS	Chr4	22352718	G-A	Homo	INTERGENIC
SBS	Chr4	26486842	G-A	Homo	INTRON
SBS	Chr5	3535343	C-T	Hetero	INTERGENIC
SBS	Chr5	12995886	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g101000
SBS	Chr6	16493305	C-T	Hetero	INTERGENIC
SBS	Chr6	17963955	C-T	Hetero	INTERGENIC
SBS	Chr6	22675103	A-T	Homo	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr7	20929759	C-T	Hetero	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr9	4661275	G-C	Hetero	INTERGENIC
SBS	Chr10	12941568	G-A	Homo	INTERGENIC
SBS	Chr10	18672268	G-A	Hetero	INTERGENIC
SBS	Chr10	21068635	A-G	Homo	INTRON
SBS	Chr12	9533720	G-A	Homo	INTERGENIC
SBS	Chr12	11874120	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1794656	1794659	3	OsKitaake01g021300
Deletion	Chr8	6612001	6646000	33999
Deletion	Chr4	14196079	14196099	20	OsKitaake04g068000
Deletion	Chr7	16159125	16159127	2
Deletion	Chr6	17626574	17626579	5
Deletion	Chr8	17700503	17700504	1
Deletion	Chr5	18647001	18764000	116999	4
Deletion	Chr5	18776001	18783000	6999	2
Deletion	Chr5	18784001	18904000	119999	14
Deletion	Chr4	20660265	20660268	3
Deletion	Chr7	23344661	23344662	1
Deletion	Chr1	25311001	25329000	17999	OsKitaake01g245201
Deletion	Chr7	27226388	27226389	1
Deletion	Chr3	30226114	30226118	4
Deletion	Chr6	30450395	30450402	7
Deletion	Chr3	36621704	36621706	2
Deletion	Chr1	37176469	37176473	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3760711	Chr1	6633701	2
Translocation	Chr5	3760720	Chr1	6634848	2
Translocation	Chr8	6071948	Chr1	8284706	OsKitaake08g065300
Translocation	Chr8	6071970	Chr1	8246728	OsKitaake08g065300
Translocation	Chr5	7414930	Chr1	5577229	OsKitaake05g074200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes