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Mutant Information

Mutant Name	FN3998-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3998-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9353991 G-A Homo INTRON
SBS Chr1 15587175 A-G Homo INTERGENIC
SBS Chr1 17827741 C-A Homo INTRON
SBS Chr1 23395285 C-G Hetero INTERGENIC
SBS Chr1 30337034 G-A Homo INTERGENIC
SBS Chr1 37036960 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g394600
SBS Chr1 40367950 C-T Hetero INTERGENIC
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr2 23766973 G-A Homo INTERGENIC
SBS Chr3 15634415 T-A Homo INTERGENIC
SBS Chr3 19638509 A-G Homo INTERGENIC
SBS Chr3 26717947 T-C Homo INTERGENIC
SBS Chr3 29313794 C-A Homo INTERGENIC
SBS Chr3 34195643 G-C Hetero INTERGENIC
SBS Chr3 35818291 G-C Hetero UTR_5_PRIME
SBS Chr3 35818292 C-A Hetero UTR_5_PRIME
SBS Chr4 8777619 A-G Homo INTERGENIC
SBS Chr4 16651848 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g081600
SBS Chr4 18065376 G-A Homo INTERGENIC
SBS Chr4 36226544 C-T Homo INTERGENIC
SBS Chr5 6577011 C-T Hetero INTERGENIC
SBS Chr5 7280163 C-T Hetero INTERGENIC
SBS Chr5 8154629 T-C Hetero INTRON
SBS Chr8 2983891 C-T Hetero INTRON
SBS Chr8 12725996 C-G Homo INTERGENIC
SBS Chr9 1991864 G-A Hetero INTERGENIC
SBS Chr9 1991865 C-A Hetero INTERGENIC
SBS Chr9 13818912 C-T Hetero INTERGENIC
SBS Chr9 20880579 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g178400
SBS Chr11 18261196 G-C Homo INTERGENIC
SBS Chr12 2578870 A-G Homo INTERGENIC
SBS Chr12 12426270 C-T Homo INTERGENIC
SBS Chr12 21768707 G-C Homo INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1301131 1301143 12
Deletion Chr7 1929001 1948000 18999 5
Deletion Chr7 1997001 2018000 20999 3
Deletion Chr1 2547347 2547354 7
Deletion Chr1 3342880 3342881 1 OsKitaake01g043600
Deletion Chr5 7604001 7641000 36999 6
Deletion Chr8 8343814 8343816 2
Deletion Chr7 8762001 8802000 39999 3
Deletion Chr12 10576040 10576042 2
Deletion Chr12 12299050 12299051 1
Deletion Chr5 15060862 15060864 2
Deletion Chr6 17439164 17439188 24
Deletion Chr4 20667210 20667212 2
Deletion Chr11 23529557 23529558 1
Deletion Chr1 24574752 24574765 13
Deletion Chr3 29435546 29435553 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21014964 21014967 2
Insertion Chr11 19368836 19368838 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1928186 2142591 OsKitaake07g029600
Inversion Chr7 2017875 2142599 OsKitaake07g029600
Inversion Chr5 7599695 7640471

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2795887 Chr3 26886301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9353991	G-A	Homo	INTRON
SBS	Chr1	15587175	A-G	Homo	INTERGENIC
SBS	Chr1	17827741	C-A	Homo	INTRON
SBS	Chr1	23395285	C-G	Hetero	INTERGENIC
SBS	Chr1	30337034	G-A	Homo	INTERGENIC
SBS	Chr1	37036960	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g394600
SBS	Chr1	40367950	C-T	Hetero	INTERGENIC
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	23766973	G-A	Homo	INTERGENIC
SBS	Chr3	15634415	T-A	Homo	INTERGENIC
SBS	Chr3	19638509	A-G	Homo	INTERGENIC
SBS	Chr3	26717947	T-C	Homo	INTERGENIC
SBS	Chr3	29313794	C-A	Homo	INTERGENIC
SBS	Chr3	34195643	G-C	Hetero	INTERGENIC
SBS	Chr3	35818291	G-C	Hetero	UTR_5_PRIME
SBS	Chr3	35818292	C-A	Hetero	UTR_5_PRIME
SBS	Chr4	8777619	A-G	Homo	INTERGENIC
SBS	Chr4	16651848	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g081600
SBS	Chr4	18065376	G-A	Homo	INTERGENIC
SBS	Chr4	36226544	C-T	Homo	INTERGENIC
SBS	Chr5	6577011	C-T	Hetero	INTERGENIC
SBS	Chr5	7280163	C-T	Hetero	INTERGENIC
SBS	Chr5	8154629	T-C	Hetero	INTRON
SBS	Chr8	2983891	C-T	Hetero	INTRON
SBS	Chr8	12725996	C-G	Homo	INTERGENIC
SBS	Chr9	1991864	G-A	Hetero	INTERGENIC
SBS	Chr9	1991865	C-A	Hetero	INTERGENIC
SBS	Chr9	13818912	C-T	Hetero	INTERGENIC
SBS	Chr9	20880579	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g178400
SBS	Chr11	18261196	G-C	Homo	INTERGENIC
SBS	Chr12	2578870	A-G	Homo	INTERGENIC
SBS	Chr12	12426270	C-T	Homo	INTERGENIC
SBS	Chr12	21768707	G-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1301131	1301143	12
Deletion	Chr7	1929001	1948000	18999	5
Deletion	Chr7	1997001	2018000	20999	3
Deletion	Chr1	2547347	2547354	7
Deletion	Chr1	3342880	3342881	1	OsKitaake01g043600
Deletion	Chr5	7604001	7641000	36999	6
Deletion	Chr8	8343814	8343816	2
Deletion	Chr7	8762001	8802000	39999	3
Deletion	Chr12	10576040	10576042	2
Deletion	Chr12	12299050	12299051	1
Deletion	Chr5	15060862	15060864	2
Deletion	Chr6	17439164	17439188	24
Deletion	Chr4	20667210	20667212	2
Deletion	Chr11	23529557	23529558	1
Deletion	Chr1	24574752	24574765	13
Deletion	Chr3	29435546	29435553	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1928186	2142591	OsKitaake07g029600
Inversion	Chr7	2017875	2142599	OsKitaake07g029600
Inversion	Chr5	7599695	7640471

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes