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| Mutant Information |
|---|
| Mutant Name | FN3999-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3999-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 13
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 31098305 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 39738007 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 323649 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 1788359 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7550739 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 2710750 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 8423077 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 23142550 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 2577412 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20869439 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 4001072 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7060859 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 2142700 | A-T | Hetero | INTERGENIC |
Deletions: 9
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 22590387 | 22590391 | 3 | |
| Insertion | Chr2 | 13778278 | 13778280 | 1 | |
| Insertion | Chr8 | 11785930 | 11785932 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 9644528 | 10223043 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 9644526 | Chr8 | 699400 | |
| Translocation | Chr10 | 19126068 | Chr1 | 30554351 | |
| Translocation | Chr10 | 19126304 | Chr1 | 30554441 | OsKitaake01g302400 |