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| Mutant Information |
|---|
| Mutant Name | FN4002-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4002-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4221781 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 21206533 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 167823 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 20034254 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 28658948 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28474960 | G-A | Homo | STOP_GAINED | OsKitaake03g295000 |
| SBS | Chr3 | 28474961 | C-A | Homo | SPLICE_SITE_REGION | |
| SBS | Chr3 | 34952816 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g381900 |
| SBS | Chr3 | 36371657 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 5379182 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12399677 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7160535 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 26326346 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 28301315 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8402987 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9132577 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 22334612 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 15670905 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 24462506 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24462507 | G-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2162694 | 2162696 | 2 | |
| Deletion | Chr1 | 14324825 | 14324828 | 3 | |
| Deletion | Chr5 | 20410365 | 20410366 | 1 | |
| Deletion | Chr4 | 23038314 | 23038315 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 6684510 | 6684513 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 25253478 | 25645370 | |
| Inversion | Chr6 | 27767924 | 27834493 | OsKitaake06g251500 |
| Inversion | Chr6 | 27767936 | 27834491 | OsKitaake06g251500 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1954965 | Chr3 | 24787062 | |
| Translocation | Chr11 | 23421643 | Chr4 | 23732950 | |
| Translocation | Chr11 | 23421654 | Chr10 | 19942533 | OsKitaake10g150000 |
| Translocation | Chr11 | 23421783 | Chr10 | 19942531 | OsKitaake10g150000 |